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22 protocols using vortex mixer

1

Preparation of Molar Sweetener Solutions

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The 6-carbon (6-C) sweeteners studied consisted of aldoses (glucose, mannose, galactose), a ketose (fructose), and an alditol (sorbitol). Solutions were prepared at 1, 2, 3, and 4 molar (M) concentrations for the 6-C sweeteners except for galactose, for which only 1 and 2 M solutions were used due to solubility limitations. The 12-carbon (12-C) sweeteners consisted of reducing sugars (maltose, isomaltulose), non-reducing sugars (trehalose, sucrose), and sugar alcohols (isomalt, maltitol), and solutions were prepared at 0.5, 1.0, and 1.5 M concentrations, with an additional 2.0 M sucrose solution. The sweetener solutions were prepared in 10 mL volumes in 15 mL centrifuge tubes. Water was added to the sweetener to ~80% of the final volume, then the tube was placed in a heating block at 80 °C for several minutes followed by vortexing on a VWR Vortex Mixer (Lebanon, NJ, USA) and/or slower rotational mixing using a Scientific Industries Roto-Shake Genie (Bohemia, NY) until the sweetener fully dissolved. Upon cooling to near ambient temperature, water was added to reach a final 10 mL volume. Solutions were not used if crystals were visible after overnight storage at ambient conditions.
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2

Pt(II) Loading on PEGylated AuNPs

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A solution of PtII was added drop-wise to either AuNP-dendron suspension or PEGylated AuNP-(dendron) suspension (in a volumetric ratio of 1 to 10), and was then mildly shaken using a vortex mixer (VWR, Radnor, PA) at 400 rpm in the dark for 2 h at room temperature. The final concentration of PtII for the reaction ranged from 0.6 µmol/L to 34 µmol/L (of Pt to Au mass ratio 1:448 to 1:8). The AuNP-containing suspension was modified to yield a pH of roughly 7 by addition of NaOH and then followed by mixing with PtII. After complexation, any free (uncomplexed) PtII was removed by gently spinning down the NPs in a microfuge at 14500 rpm and replacing the supernatant with DI water. Actual spinning time may vary from 30 mins to more than 1 h depending the stability and volume of the sample. The cleaning step was examined and optimized to ensure that free PtII would not influence the PtII loading measurement. (Supplemental Information (SI) Figure S1(a))
The effect of reaction time on PtII complexation was also examined (SI Figure S1(b)), based on which a 2 h reaction time was deemed sufficient, as no significant increase in PtII loading was observed over longer reaction times.
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3

Phosphorus Concentration Measurement

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The phosphorus concentration measurement was performed using the ammonium metavanadate (NH4VO3) method and the visible light spectrophotometry method (Jenway Spectrophotometer). 0.5 mL of each sample were placed in a test tube, adding 1 mL of ammonium molybdate ((NH4)6Mo7O24·4H2O) and 3.5 mL of triple distilled water. The samples were mixed using a vortex mixer (VWR), letting them rest for an hour afterwards. After one hour had elapsed, readings were taken for each sample. The phosphorus concentration is shown as a percentage [41 ]. For the analysis three repetitions were used.
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4

Verbenae herba Sample Preparation

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Sample preparation followed a published protocol 29. Briefly, ground Verbenae herba plant material (VO‐1 to VO‐3) was frozen in liquid nitrogen and homogenized with an analytical ball mill (Mikro‐Dismembrator, Sartorius, Göttingen, Germany). 100.0 ± 0.1 mg plant material was weighed into 1.5 mL polyethylene microcentrifuge tubes (Eppendorf, Hamburg, Germany), mixed with 1.0 mL ethanol/water (1:1, v/v) on a Vortex mixer (VWR, Vienna, Austria) and extracted by sonication for 10 min. After centrifugation (10621 x g for 5 min) supernatants were placed in a 5 mL volumetric flask. This procedure was repeated four more times, and the flask filled up to the final volume with the extraction solvent. All sample solutions were prepared in triplicated and filter prior analysis.
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5

Emulsification Properties of Chitosan Derivatives

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The emulsification
properties of CMChi and h-CMChi were studied by mixing 3 mL (0.5 mg
mL–1) of CMChi or h-CMChi solution with varying
amounts of dodecane (0.3–6.0 mL), resulting in a series of
samples where the oil/water ratio varied between 0.1 and 2.0. These
series of samples were prepared in varying pH between 6 and 10. The
mixing was conducted in a glass vial (diameter 25 mm, height 95 mm)
with a vortex mixer (VWR) at 2500 rpm for 10 s. The mixture was poured
gently into a centrifuge tube (15 mL) and centrifuged at 1000 rpm
(RCF 201) for 2 min. The amount of separated dodecane was measured
to determine the stability of the emulsion. The amount of separated
dodecane correlates with the emulsion stability.
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6

Microwave-Assisted Extraction and Cleanup for Soil POPs

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Sodium sulfate (7 g) was added to soil samples (5 g) to remove any moisture and followed by addition of 15 mL of 2:1 hexane:acetone mixture, 5 mL of 1:4 triethylamine:acetone mixture, and p-terphenyl-d14 in a microwave extraction tube (Chigbo et al. 2013 (link)). The content of the tube was mixed using a vortex mixer (VWR, UK) and shaken by inversion to dislodge soil material from the base. Extraction was carried out with a microwave extraction unit (CEM MARS) with the following conditions: temperature ramp to 100 °C at 800 W for 12 min, hold at 100 °C at 800 W for 10 min then cool for 5 min in accordance with the USEPA method 3546 (USEPA 2007 ). Following the extraction, the clear extracts were transferred into glass tubes (20 mL). For the solid phase extraction, SPE HF Mega BE-SI 2 g 12 mL cartridges (Agilent, UK) were conditioned with 5 mL of hexane then, 1 mL of sample extract was added and eluted with 10 mL of 1:1 hexane:dichloromethane mixture. The eluant was collected in a clean 20 mL glass tube and concentrated to a final volume of 1 mL under a gentle stream of nitrogen gas. Samples were prepared in 2 mL vials (Agilent, UK) by adding a semi-volatile internal standard mix to the concentrated sample extracts from soil samples for GC-MS analysis.
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7

Antioxidant Potential of Edible Films

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Samples (500 mg) in the form of edible films (EFs) were weighed with the addition of methanol (15 mL). EFs solutions were initially mixed vigorously by using a vortex mixer (VWR int., Germany) followed by centrifugation at 10,000 RPM for 5 min at 5 °C. The supernatant obtained was utilized for assessing antioxidant activities.
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8

Quantifying E.coli Survival on Surfaces

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For the recovery and estimation of the surviving E.coli, the coupons were placed in individual 50 mL centrifuge tubes. 5 mL of PBS was added to each tube containing a coupon. The tubes were then vortexed at medium speed for 30 seconds on the vortex mixer (VWR Scientific, Radnor PA). The rinsate was serially diluted and plated on Tryptic Soy Agar (TSA) (Becton Dickinson, Franklin Lakes NJ). The plates were placed in a 37°C stationary incubator and grown overnight before colony counting. The results were expressed as cfu/ml.
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9

Raman Spectroscopy of Chloride Salt Solutions

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1M chloride salt solutions were prepared using CaCl2, MgCl2, KCl, NaCl, MnCl2, iron(III)chloride hexahydrate (FeCl3 + 6 H2O), CuCl2, and ZnCl2 crystals (purity ≥ 98.0%; Sigma-Aldrich, 3050 Spruce St., St. Louis, MO, USA) dissolved in deionized water. These chloride salt solutions were separately kept in polypropylene containers. Before Raman measurements, each solution was well shaken using a vortex mixer (VWR International Ltd., Blanchardstown, Dublin, Ireland) for 1 min to ensure complete dissolution. During the experiment, 10 mL of each solution was transferred into a 50 mL quartz beaker with aluminum foil smoothly covering the outer surface and then placed on an elevating frame under the fiber optic probe stand of the Raman spectrometer (ThermoFisher Scientific UK Ltd., Loughborough, UK). The sample was raised to ensure that its surface was 2 mm away from the quartz screen of the probe head. Detailed measurement procedures and instrumental settings are described in Section 2.2. Each sample was scanned twice at two different surface locations; the mean of these duplicate spectra was used for chemometric analysis.
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10

Extraction and Quantitation of B. scorpioides

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For the preparation of each sample, 100 mg of B. scorpioides plant material was frozen in liquid nitrogen and homogenized using a Mikro-Dismembrator (Sartorius, Göttingen, Germany). The homogenization procedure was done separately for each of the different experiments (quantitation, precision, and accuracy). For extraction, 7.0 mL of water was added to the plant material, the sample was mixed on a Vortex mixer (VWR, Vienna, Austria) and afterwards extracted in an ultrasonic bath (15 min at room temperature). After centrifugation at 2000× g for 2 min the supernatant was placed in a 25 mL volumetric flask. This procedure was repeated twice and subsequently the flask was filled up to the final volume with the extraction solvent. Finally, the sample solution was filtered through 0.45 µm Phenex-RC 4 mm syringe filters (Phenomenex, Torrance, CA, USA).
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