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4 2 hydroxyethyl 1 piperazineethanesulfonic acid hepes

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4-(2-hydroxyethyl)-1-piperazineethanesulfonic acid (HEPES) is a chemical compound commonly used as a biological buffer in cell culture and biochemical applications. It maintains a stable pH within a physiologically relevant range, enabling the optimal functioning of various biological systems and processes.

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180 protocols using 4 2 hydroxyethyl 1 piperazineethanesulfonic acid hepes

1

Photopolymerized Hydrogel Nanoparticle Synthesis

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Glycidyl methacrylate (GMA), ethylene glycol dimethacrylate (EDMA), 1-dodecanol, 2,2-dimethoxy-2-phenylacetophenone (DMPA), poly (ethylene glycol) diacrylate (PEGDA, MW 250), Tris hydrochloride, 3-(trimethoxysilyl)propyl methacrylate, dimethyl sulfoxide (DMSO), phenylbis (2,4,6 trimethylbenzoyl) phosphine oxide (Irgacure 819), Amicon ultra 0.5-mL centrifugal filters (10 and 50 kDa cutoff), boric acid, sodium bicarbonate, and sodium carbonate were obtained from ThermoFisher (St. Louis, MO). Alexa Fluor 532 (carboxylic acid, succinimidyl ester) and Tris base were purchased from Fisher Scientific (Fair Lawn, NJ). Solutions were made using deionized water (18.3 MΩ) filtered by a Barnstead EASY-pure UV/UF system (Dubuque, IA). Isopropyl alcohol (IPA) was from Macron (Center Valley, PA). Cyclohexanol was obtained from Spectrum (New Brunswick, NJ). 2-nitrophenyl phenyl sulfide (NPS) came from TCI (Portland, OR). Amicon ultra-4 centrifugal filters (15 mL, 10 and 30 kDa cutoff), and 4-(2-hydroxyethyl)-1-piperazineethanesulfonic acid (HEPES) were purchased from EMD Millipore (Billerica, MA). Glass slides for 3D printing were purchased from VWR (Radnor, PA).
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2

Synthesis and Characterization of Stimuli-Responsive Copolymer

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The random copolymer P(NIPAM-co-DMAEMA) (Poly(N-isopropylacrylamide-co-dimethylaminoethyl methacrylate), Mn = 7.200 g/mol, NIPAM 78 mole%, DMAEMA 22 mole%) was synthesized by RAFT polymerization [20 (link)] (Figure 7). The Bortezomib (BZM, M = 384.24, g/mol, >98%, Hycultec GmbH, Vilshofener Str. 35, 94501 Beutelsbach, Germany) was used as purchased. Further, the caffeic acid (CA, M = 180,16 g/mol, ≥ 98%), the 4-(2-hydroxyethyl)-1-piperazineethanesulfonic acid (HEPES, M = 238.31 g/mol, ≥ 99.5%) and the sodium metaperiodate (NaIO4, M = 213.89 g/mol, ≥ 99.5%) where obtained by Sigma Aldrich (Merck KGaA, 64293 Darmstadt, Germany) and used without further purification. For solving and dilution, ultrapure water (Milli-Q Advantage A10 (Merck KGaA, 64293 Darmstadt, Germany)) was used.
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3

Measurement of Oxidative Stress Biomarkers

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Trichloroacetic acid (TCA), 5,5-dithionitrobenzoic acid (DTNB), thiobarbituric acid (TBA), isopropanol, p-dimethylamino benzaldehyde, 2,4-dinitrophenylhydrazine (DNPH), meta-phosphoric acid, 2-amino-2-hydroxymethyl-propane-1,3-diol-hydrochloride (Tris—HCl), glacial acetic acid, guanidine hydrochloride, phenylmethylsulfonyl fluoride (PMSF), bovine serum albumin (BSA), diethyl pyrocarbonate (DEPC), chloroform, boric acid, and ammonium molybdate were obtained from Kalazist Co. (Tehran, Iran). Ascorbic acid, vanadium chloride, sodium nitrite, ethylenediamine tetra-acetic acid (EDTA), Tris base, tetra ethoxy propane (TEP), N-(l-naphthyl)-ethylendiamine-dihydrochloride (NEDD), sulfanilamide, sodium acetate, ethyl acetate, 4-(2-hydroxyethyl)-1-piperazineethanesulfonic acid (HEPES), dithiothreitol (DTT), Coomassie blue, hydrogen peroxide, and Triton X-100, were obtained from Merck (Darmstadt, Germany). Ethanol, formalin, and hydrochloric acid (HCl) were obtained from Mojallali Co. (Tehran, Iran). 2,4,6-Tripyridyl-S-triazine (TPTZ) was obtained from Sigma-Aldrich (Missouri, US).
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4

HaCaT Cell Culture and Maintenance

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HaCaT cells (CLS Cell Lines Service) were grown in Dulbecco's Modified Eagle's medium (DMEM) cell culture medium supplemented with 4.5 g/L glucose (Merck KGaA, Darmstadt, Germany), 15 mmol/L 4-(2-hydroxyethyl)-1-piperazineethanesulfonic acid (HEPES) (Merck KGaA, Darmstadt, Germany), 2 mmol/L L-glutamine (Merck KGaA, Darmstadt, Germany), 10% FBS Merck KGaA (Darmstadt, Germany), and 1% antibiotic-antimycotic cocktail (Gibco, Thermo Fisher Scientific, Waltham, MA, USA). Cells were cultured at 37°C in a humidified 5% CO2 environment. Cell culture medium was freshly changed every 2 days. Cells were subcultured every 4 days. Briefly, cells were detached using freshly prepared trypsin/EDTA solution (Merck KGaA, Darmstadt, Germany) and incubated at 37°C for 10 minutes. Cells were collected by centrifugation at 300 x g for 5 minutes. Finally, cells were seeded at a split ratio of 1 : 10. To perform the experiments, harvested and centrifuged cells were counted using a Neubauer chamber and seeded in cell culture plates at a density of 2.5 × 104 cells/mL. Cells were always allowed to attach for 48 hours before starting the experiment. Cells were routinely tested for mycoplasma contamination.
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5

Immunoassay Reagents and Protein Standards

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All chemicals were of analytical grade, if not otherwise stated. Sodium chloride (NaCl), sodium hydroxide (NaOH), SDS, 2‐(N‐moprholino)ethanesulfate acid (MES), Tween‐20, sulfuric acid (95–97%, H2SO4), uranyl acetate were purchased from Merck (Darmstadt, Germany).
4‐(2‐Hydroxyethyl)‐1‐piperazineethanesulfonic acid (HEPES) (≥99.5%), 2‐propanol, bovine serum albumin (BSA) (≥99.5%), 1,4‐dithiotreitol (DTT), anti‐mouse IgG (γ‐chain specific)‐alkaline phosphatase antibody (#3438), BCIP®/NBT solution, triton X‐100, glutaraldehyde solution (grade I), acetonitrile (MS grade), formic acid (98–100%), and iodacetamide (≥99%) were purchased from Sigma Aldrich (St. Louis, MO, USA). Anti‐rabbit IgG (H+L) secondary antibody (#31460), anti‐mouse IgG (H+L) superclonal secondary antibody (#A28177) were purchased from Thermo Fisher (Waltham, MA, USA). SeeBlue® plus 2 prestained protein standard and 4× LDS sample buffer were purchased from Invitrogen (Carlsbad, CA, USA). C‐LEcta Denarase® was purchased from VWR (Radnor, PA, USA), HIV‐1 p24 antibody (ab9071) and ACV5 (ab49581) from Abcam (Cambridge, UK), influenza A virus H1N1 HA (GTX127357) from GeneTex (Irvine, CA, USA) and trypsin from Promega (Madison, WI, USA).
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6

Functionalized Polystyrene Nanoparticle Synthesis

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Three types of NPs (60 nm diameter) were
purchased from Magsphere Inc. (Pasadena, CA) and included: nonfunctionalized
polystyrene (PS) (plain NP according to manufacturer’s nomenclature),
aminated polystyrene (PS-NH2), and carboxylated polystyrene
(PS-COOH). Lipids dissolved in chloroform, 1,2-dioleoyl-sn-glycero-3-phosphocholine (DOPC), 1,2-dioleoyl-sn-glycero-3-phospho-l-serine (DOPS), and 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine (DOPE) were purchased from
Avanti Polar Lipids (Alabaster, AL). Sodium chloride and 4-(2-hydroxyethyl)-1-piperazineethanesulfonic
acid (HEPES) were obtained from Merck KGaA (Darmstadt, Germany). All
solutions were prepared using ultrapure water (UW) (Simplicity UV,
Merck KGaA, Darmstadt, Germany) with a resistivity of 18.2 MΩ/cm
at 25 °C and filtered through a 0.20 μm pore size filter
(Scharlau, Spain).
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7

Comprehensive Biochemical Assay Protocol

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Glutathione (GSH), 2′,7′-dichlorofluorescein diacetate (DCFH-DA), trichloroacetic acid, malondialdehyde, 3-[4,5dimethylthiazol-2-yl]-2,5-diphenyltetrazolium bromide, 2,4,6-tripyridyl-s-triazine, ferric chloride hexahydrate (FeCl3.6H2O), D-mannitol, thiobarbituric acid, 3-(N-morpholino) propane sulfonic acid, fatty acid-free bovine serum albumin fraction V, coomassie brilliant blue, Rhodamine123, dinitrophenylhydrazine (DNPH), dithiothreitol (DTT), ethylene glycol-bis(β-aminoethyl ether)-N, N, N′, N′-tetraacetic acid (EGTA), Ethylenediaminetetraacetic acid (EDTA), 6-hydroxy-2,5,7,8-tetramethylchroman-2-carboxylic acid (Trolox), tramadol, bovine serum albumin (BSA), and sucrose were obtained from Sigma (Sigma-Aldrich, St. Louis, MO). Kits for assessing biomarkers of renal injury were obtained from Parsazmoon® (Tehran, Iran). High-performance liquid chromatography (HPLC) grade methanol, potassium chloride (KCl), 3-(N-morpholino) propanesulfonic acid (MOPS), iodoacetic acid, 4-(2-hydroxyethyl)-1-piperazineethanesulfonic acid (HEPES), acetonitrile HPLC grade, meta-phosphoric acid, dinitro fluoro benzene, n-butanol, and 2-amino-2-hydroxymethyl-propane-1,3-diol-hydrochloride (Tris-HCl), were purchased from Merck (Darmstadt, Germany).
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8

Oxidative Stress Biomarkers Evaluation Protocol

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2′,7′-Dichlorofluorescein diacetate (DCFH-DA), trichloroacetic acid (TCA), 3-[4,5dimethylthiazol-2-yl]-2,5-diphenyltetrazolium bromide (MTT), sucrose, perchloric acid, D-mannitol, imatinib mesylate, Rhodamine123 (Rh 123), 3-(N-morpholino) propane sulfonic acid (MOPS), 2, 4-dinitrofluorobenzene (DNFB), sodium acetate, acetic acid glacial, 2, 4, 6-tripyridyl-s-triazine (TPTZ), iodoacetic acid, dithiothreitol (DTT), 6-hydroxy-2,5,7,8-tetramethylchroman-2-carboxylic acid (Trolox), and thiobarbituric acid (TBA) were purchased from Sigma (Sigma-Aldrich, St. Louis, MO). Kits for evaluating serum biomarkers of renal injury were obtained from Pars Azmun® (Tehran, Iran). Ethylenediaminetetraacetic acid (EDTA), reduced glutathione (GSH), malondialdehyde (MDA), fatty acid-free bovine serum albumin (BSA) fraction V, oxidized glutathione (GSSG), ferric chloride hexahydrate (FeCl3.6H2O), coomassie brilliant blue, 4-(2-hydroxyethyl)-1-piperazineethanesulfonic acid (HEPES), meta-phosphoric acid, n-butanol, and 2-Amino-2-hydroxymethyl-propane-1,3-diol-hydrochloride (Tris-HCl) were obtained from Merck (Merck KGaA, Darmstadt, Germany). All salts used for preparing buffer solutions were of the analytical grade and obtained from Merck (Merck KGaA, Darmstadt, Germany).
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9

Cell Culture and Uptake Protocol

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Poly-(styrene-co-maleic anhydride), cumene terminated (average MW ~1600), N-(3-dimethylaminopropyl)-N-ethylcarbodiimide hydrochloride (EDAC), Hank’s balanced salt solution, advanced Dulbecco’s Modified Eagle’s Medium (DMEM), Roswell Park Memorial Institute (RPMI) 1640 medium, fetal bovine serum (FBS), bovine serum albumin (BSA), and TrypLE Express were purchased from ThermoFisher Scientific (Dubai, United Arab Emirates). Human recombinant insulin (91077C) was purchased from Merck (Hertfordshire, UK). L-glutamine, penicillin/streptomycin, glucose uptake fluorometric assay Kit, 4-(2-hydroxyethyl)-1-piperazineethanesulfonic acid (HEPES), and pepsin were purchased from Merck (Hertfordshire, UK). All consumables such as petri dishes, plastic tubes (15 mL and 50 mL), cell culture flasks (25 cm2 and 75 cm2), transwell plates (CLS3460), and simulated gastric fluids (cat no. 1651) were purchased from Merck (Hertfordshire, UK).
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10

In Vitro Assay for Cell Viability

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1,5-Carboxy-seminaphtorhodafluor
acetoxymethylester (SNARF-1-AM) and Dulbecco’s modified Eagle’s
medium GlutaMAX (DMEM) were purchased from Thermo Fisher Scientific.
Fetal bovine serum (FBS Supreme), trypsin/ethylenediaminetetraacetic
acid, and penicillin–streptomycin were obtained from PAN-Biotech
GmbH (Aidenbach, Germany). Phosphate buffered saline was bought from
Biozym Scientific GmbH (Hessisch Oldendorf, Germany). Dimethyl sulfoxide
(DMSO) was purchased from Carl Roth (Karlsruhe, Germany). CaCl2, casein from bovine milk, 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium
bromide (MTT), d-glucose, formic acid, HCl, 4-(2-hydroxyethyl)-1-piperazineethanesulfonic
acid (HEPES), KCl, KH2PO4, KOH, MeCN, MgCl2(H2O)6, MgSO4, NaCl, NaHCO3, (NH4)2CO3, and pepsin from
porcine gastric mucosa were ordered from Merck KGaA (Darmstadt, Germany).
Custom peptides (PVVVPPFLQPEVM, VAPFPEVF, YFYPEL, YQEPVLGPVRGPFPIIV,
and YYVPLGTQ) were synthesized by Genscript Biotech with a purity
of >95% (New Jersey, USA). Double-distilled water (ddH2O) from Elga Purelab Classic (Veolia Water Solutions & Technologies,
France) was used for all experiments. Krebs-Ringer–HEPES buffer
(KRHB) contains 130 mM NaCl, 4.7 mM KCl, 1.3 mM CaCl2,
1.2 mM MgSO4, 1.2 mM KH2PO4, 11.7
mM d-glucose, and 10 mM HEPES; the pH was adjusted to 7.4
with KOH.
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