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13 protocols using p erk 4370

1

Western Blot Antibody Profiling

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Antibodies against SOS1 (12409), vinculin (4650), MEK 1/2 (4694), p-MEK
1/2 (9121), ERK 1/2 (9107), p-ERK (4370), AKT1 (2967), and p-AKT (4058) were
purchased from Cell Signaling Technology. The β-actin (sc47778) antibody
was purchased from Santa Cruz Biotechnology.
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2

Antibody and Inhibitor Assay Protocol

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Antibodies against Flag (catalog number: M185-3 L) and β-actin (M177–3) were purchased from Medical Biological Laboratories (Nagoya, Japan). Antibodies against matrix metalloproteinase (MMP)9 (A0289) were obtained from ABclonal (Woburn, MA, USA). Antibodies against P21 (2947), cyclin D1 (2978), c-Jun N-terminal kinase (JNK; 9252), phosphorylated (p)-JNK (4668), protein kinase B (AKT; 4691), p-AKT (4060), p38 (9212), p-p38 (4511), extracellular signal-regulated kinase (ERK; 4695) and p-ERK (4370) were purchased from Cell Signaling Technology (Danvers, MA, USA).
The JNK inhibitor JNK-IN-8 (HY-13319, MCE, USA) was dissolved in dimethyl sulfoxide (DMSO) and diluted into a 0.5-μM working solution with complete culture medium, and the same amount of DMSO was set as the control.
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3

Serum Starvation and Kinase Signaling

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Cells were serum starved for 16 hours in Roswell Park Memorial Institute medium (RPMI) with 0.7% fetal calf serum (FCS) before inhibitor treatment. Cell lysates in RIPA buffer (50 mM Tris, pH 8, 150 mM NaCl, 0.1% sodium dodecyl sulfate [SDS], 0.5% sodium deoxylate, 1% nonyl phenoxypolyethoxylethanol [NP40]) were subjected to western blotting with the following antibodies, all from Cell Signaling Technologies (Danvers, MA, USA): pIGF-1R (3021) (phosphorylated insulin like growth factor-1-receptor); pJAK2 (3771) (phosphorylated janus kinase 2); pSTAT5 (9351) (phosphorylated signal transducer and activator of transcription 5); pMEK (9121) (phosphorylated MAPK/ERK kinase); pERK (4370) (phosphorylated extracellular signal regulated kinase); pAKT (9275) (phosphorylated protein kinase B); IGF-1R (3027); JAK2 (3230); STAT5 (9352); MEK (9122); ERK (9102); AKT (9272). Blots were stripped and reprobed against beta actin (Sigma A5441) to ensure equal loading. Immune complexes were detected using chemiluminescence (K12-045-D20, Advansta, San Jose, CA, USA).
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4

Protein Isolation and Immunoblotting Assay

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Protein was isolated in RIPA buffer (Millipore), supplemented with Halt protease inhibitor (Thermo Scientific, Rockford, IL, USA). Primary antibodies were used according to the manufacturer's instructions: TFAP2C #sc-12762, NEU #sc-284, ERK #sc-93, GAPDH #sc-32233 and EGFR sc-03 (Santa Cruz Biotechnology, Santa Cruz, CA, USA); pERK #4370 (Cell Signaling, Danvers, MA, USA). Secondary antibodies were used according to manufacturer's instructions: anti-rabbit HRP #sc-2030 and anti-mouse HRP #sc-2005. Protein was visualized with SuperSignal West Dura extended duration substrate (Thermo Scientific) and SuperSignal West Femto maximum sensitivity substrate (Thermo Scientific).
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5

Cardiac Biomarker Expression Analysis

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GPR30 (ab37742), vimentin (ab92547), cardiac troponin I (ab47003), TGF-β1 (ab27969), and MMP-9 38,898) were purchased from Abcam. ERK 4,695) and p-ERK (4,370) were purchased from Cell Signaling Technology. GAPDH was obtained from Santa Cruz Biotechnology (Santa Cruz, CA, United States ). The rabbit anti-goat, goat anti-rabbit, and goat anti-mouse secondary antibodies were purchased from the Zhongshan Company (Beijing, China). The MMP-9 ELISA kit was purchased from Elabscience Bioengineering Institute (Wuhan, China). GPR30 agonist G1 (10,008,933) and GPR30 antagonist G15 14,673) were purchased from Cayman Chemical (Ann Arbor, MI, United States ). The ERK inhibitor PD98059 (HY-12028) and DOX (HY-15142) were purchased from MCE. AAV-GPR30 was purchased from the GeneChem Company (Shanghai, China). DAPI was obtained from Roche Molecular Biochemicals (Bayer, Mannheim, Germany). The ECL reagent was purchased from Millipore (Billerica, MA, United States ).
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6

Protein Extraction and Western Blot Analysis

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Cells were plated in 6 well plates 24h prior to protein extraction. Cells were washed with phosphate buffered saline (PBS) and lysed using radio-immunoprecipitation (RIPA) buffer [150 mM NaCl, 1% (vol/vol) Nonidet P-40, 0.5% (wt/vol) sodium deoxycholate, 0.1% (wt/vol) SDS] in 50 mM Tris·HCl (pH 8.0) supplemented with 1x protease and phosphatase inhibitors (78442; Pierce). Protein concentrations were determined using the BCA Protein Assay kit (23235; Pierce). Total protein in 1×Laemmli buffer with 10% 2-mercaptoethanol was separated by SDS/PAGE, transferred for 1 h to a PVDF membrane (IPVH00010; Millipore) by electro blotting with 20% (vol/vol) methanol, and blocked for 1 h in 5% (wt/vol) dry milk/Tris-buffered saline (TBS)/0.1% (vol/vol) Tween-20. Membranes were incubated overnight at 4°C with primary antibodies following incubation with horseradish peroxidase-conjugated secondary antiserum for 1 h and developed using enhanced chemiluminescence [32106 (Pierce) or 64 – 201BP (Millipore)]. β –Actin protein expression served as a loading control. P-ERK (4370), p-AKT (4060), and p-S6 (4857) were obtained from Cell Signaling Technology, β –Actin was purchased from Sigma Aldrich.
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7

Microglia Profiling and Vascular Signaling

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Microglia were labelled using a rabbit primary antibody targeting ionized calcium binding adapter molecule 1 (IBA‐1) (019‐19741) from Wako (Richmond, VA, USA). Antibodies against basigin (Rabbit polyclonal antibody used for Western blot, ab64616; Rat monoclonal antibody used for immunofluorescence double labelling, ab34016), PECAM (ab9498), IGF‐1 (ab9572), IGF‐1 receptor (ab16890), VEGF (ab51745) and VEGFR‐2 (ab5473) were purchased from Abcam (Cambridge, MA, USA). HIF‐1α (MAB 5382) was obtained from Millipore (Billerica, MA, USA). Antibodies against AKT (9272), P‐AKT (4060), ERK (4695), P‐ERK (4370) and the MEK1/2 inhibitors PD98059, PI3K inhibitor LY294002 were from Cell Signaling (Andover, MA, USA). Antibodies against β‐actin were from Santa Cruz (Santa Cruz, CA, USA). Recombinant human IGF‐1 (100‐11) was from ProteinTech (Rochy Hill, NJ, USA). Secondary antibodies including goat anti‐rabbit conjugated to AlexaFluor 594/CY3 or AlexaFluor 488/FITC were purchased from Beijing ComWin (Beijing, China). SYBR Premix Ex Taq II and Multiscript RT were purchased from TaKaRa (Dalian, China).
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8

Cell Lysis and Protein Analysis

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Cells were lysed in RIPA lysis buffer (1% NP-40, 50 mM Tris pH 7.4, 150 mM NaCl, 0.1% SDS, 1% sodium deoxycholate and 50 mM EDTA) with 1 × HALT protease and phosphatase inhibitors (Thermo Scientific). Lysates were run on SDS–polyacrylamide gel electrophoresis gels and transferred to nitrocellulose membranes. Membranes were immunoblotted with anti-ICAM-1 BBIG-I1 (1:1,000), VCAM-1 BBIG-V1 (1:1,000), E-selectin BBIG-E4 (1:1,000) (R&D systems), MAP4K4 A301-503A (1:2,000) (Bethyl), VE-cadherin 2500 (1:2,000), p-JNK1/2 4668 (1:1,000), total JNK1/2 9258 (1:1,000), p-p38 MAPK 4631 (1:1,000), p-IκBα 9246 (1:1,000), IκBα 4814 (1:1,000), p-p65 3039 (1:1,000), p65 8242 (1:1,000), HGK 3485 (1:1,000), p-Erk 4370 (1:1,000) (Cell Signaling Technology), total p38 MAPK sc-535 (1:1,000), total Erk1 sc-93 (1:4,000) (Santa Cruz) or lamin-β1 ab16048 (1:1,000) (Abcam) antibodies. Uncropped western blot images are provided as Supplementary Figs 4–6.
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9

Western Blot Analysis of MAPK and PI3K/mTOR Pathways

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CRAF-fusion-expressing NIH3T3 and PMAs were processed for western blot analysis as described previously.3 (link) For MAPK and PI3K/mTOR pathway analysis, pMEK (#9154), MEK (#4694), pERK (#4370), ERK (#4695), pAKT Ser473 (#4060), pAKT Thr308 (#4056), AKT (#2920), pS6 (#2215) and S6 (#2317) antibodies from Cell Signaling were used.
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10

Western Blot Analysis of Signaling Proteins

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Cells were lysed in RIPA buffer (Roche) containing protease inhibitors (Roche) and Phosphatase Inhibitor Cocktails I and II (CalBioChem). Protein concentrations were determined using a Bradford assay (Bio-Rad). Proteins were separated by SDS gel electrophoresis using NuPAGE 4–12% Bis-Tris gels (Life Technologies) in MOPS buffer. Resolved protein was transferred to nitrocellulose membranes, blocked in 10% milk and probed with primary antibodies recognizing AKT (9272S), p-AKT (4060P), ERK (4695S), p-ERK (4370S), CDK12 (11973), tubulin (3873S), EGR1 (4153S) (all from Cell Signalling Technology), CDK7 (sc-723, Santa Cruz), SPRED2 (ab153700, Abcam), NF1 (sc-67, Santa Cruz), actin (A5441, Sigma-Aldrich) and vinculin (V9131, Sigma-Aldrich) in 5% milk or 3% bovine serum albumin as recommended by the manufacturer. After incubation with the appropriate secondary antibody (Pierce anti-mouse IgG/IgM (31444, Thermo Scientific) and anti-rabbit IgG (31460, Thermo Scientific)), blots were imaged on film.
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