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118 protocols using anti β tubulin

1

Immunofluorescence Assay for Apoptosis

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At the end of capsaicin and SMF treatments, cells were washed with PBS and fixed with 3.7% paraformaldehyde (PFA; Sigma) in PBS for 15 min at RT. Fixed cells were then permeabilized with 0.1% Triton X-100 in PBS for 15 min. Nonspecific protein binding was blocked with 1% BSA in PBS for 20 min at RT. After washing three times with PBS, the cells were incubated with anti-β-tubulin (1:1000 dilution; Abcam) and anti-active caspase-3 (1:800 dilution; Cell Signaling Technology) primary antibodies overnight at 4°C. The cells were then washed three times in PBS, and incubated in the Alexa Fluor 488-conjugated donkey anti-goat secondary antibody and the Alexa Fluor 647-conjugated donkey anti-rabbit secondary antibody (1:500 dilution; Jackson ImmunoResearch Inc.) for 1 h at 37°C in the dark. The coverslips were mounted to slides in mounting medium with DAPI (Abcam). The mounted samples were examined by a Zeiss LSM 880 inverted laser scanning confocal microscope. Pictures of randomly selected areas were taken for each sample and representative micrographs are shown in the figures.
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2

Western Blot Analysis of Lipogenic Proteins

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Western blot analysis was carried out as previously described [29 (link)]. Lysates were fractionated by SDS-PAGE and proteins were blotted on nitrocellulose membranes. Blots were pre-blocked in PBS containing 5% (w/v) dried no fat milk and then incubated overnight at 4 °C with antibodies to anti-FASN (Sigma-Aldrich, St. Louis, MO, USA), anti-DHCR24 (Cell Signaling Technology, Danvers, MA, USA), p27 kip1 (BD Biosciences, Franklin Lakes, NJ, USA) and Bim (Abcam, Cambridge, UK). Anti-actin (Sigma-Aldrich, St. Louis, MO, USA) or anti-β-tubulin (Abcam, Cambridge, UK) antibodies were used as control for loading. Antibody binding to blots was detected by chemo-luminescence (GE Healthcare, Chicago, IL, USA). Secondary antibodies were obtained from GE Healthcare. At least three independent experiments were performed. Band intensity quantification was performed using the ImageJ 1.47 v software.
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3

Investigating Type I IFN Signaling Pathways

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Cells were seeded in six-well plates at a concentration of 5 × 105 per well in 1 mL of medium and transfected with miRNA mimics or miRNA inhibitors. The cells were stimulated with type I IFN (1000 U/mL) 24 h after transfection and the cells were lysed at the indicated time points. The proteins were extracted, separated with sodium dodecyl sulfate-polyacrylamide gel electrophoresis, blotted, and probed with the specified primary antibodies directed against phosphorylated STAT1 (p-STAT1), STAT1, p-STAT2, STAT2, JAK1, PTP1B, p-P44/42 MAPK (ERK1/2), P44/42 MAPK (ERK1/2), p38 MAPK, p-p38 MAPK, and p-TYK2 (Cell Signaling Technology, diluted 1:1000); anti-STAT3, anti-p-STAT3, and anti-p-JAK1 (Santa Cruz Biotechnology, diluted 1:200); anti-TYK2 and anti-β-tubulin (Abcam, diluted 1:1000 and 1:5000, respectively). The secondary antibodies used were obtained from Cell Signaling: horseradish-peroxidase (HRP)-linked anti-rabbit IgG antibody (diluted 1:5000), and HRP-linked anti-mouse IgG antibody (diluted 1:4000). The signal was generated with SuperSignal® West Pico Luminol/Enhancer Solution (Pierce). We used Tanon 6600 Luminescent Imaging Workstation (Tanon Science & Technology, Shanghai, China) to scan the film. And band signal intensity was analyzed using Image J.
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4

Characterization of Cytokine Vaccines

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GM‐CSF Vaccine was labeled with FITC anti‐GM‐CSF monoclonal antibody (BD Biosciences Pharmingen, San Diego, CA). IL‐2 Vaccine was labeled with FITC anti‐IL‐2 monoclonal antibody (BD Biosciences Pharmingen). Pure biotinylated cells were set as negative control. These vaccines were evaluated by a BD FACSAria cell sorter.
These vaccines were lysed, and membrane fractions were harvested. The SA‐GM‐CSF and SA‐IL‐2 bioactivities were evaluated by proliferation in bone marrow cells, and the SA‐green fluorescent protein (GFP) was the control group. The bone marrow cells and the membrane fractions were incubated together in 96‐well plates. Cell viability was recorded by the CCK‐8 assay described previously 8.
The level of GM‐CSF or IL‐2 antibody on the vaccine was measured by Western Blotting as described ahead 8. The primary antibodies were anti‐GM‐CSF (Abcam, Cambridge, MA), anti‐ IL‐2 (Abcam) and anti‐β‐tubulin (Abcam), while SA‐GFP was set as negative control.
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5

Neuroinflammation and Apoptosis Assay

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Naloxone was purchased from Taizhou Hongyao Chemical Co., Ltd. Naltrexone and phloroglucinol were supplied by Aladdin. The dialysis bags, FITC, fura-2AM fluorescent probe, nissl staining solution, hematoxylin eosin (HE) staining kit and BCA protein concentration determination kit were ordred from Beyotime Biotechnology. LPS, Fetal bovine serum (FBS), DMEM, penicillin-streptomycin (PS) and trypsin-EDTA (0.25%) were purchased from Gibco Company. Protein lysate (RIPA), phenylmethanesulfonyl fluoride (PMSF) and 4′,6-diamidino-2-phenylindole (DAPI) were bought from Beijing Solarbio Science & Technology Co., Ltd. Anti-CD11b, anti-F4/80, anti-iNOS, anti-TNF-α, anti-IL-1β, anti-IL-6, anti-IL-10, anti-Bax, anti-caspase 3, anti-bcl-2, anti-β-tubulin, anti-GAPDH, anti-β-actin were supplied by Abcam.
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6

Immunofluorescence Analysis of DCs

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DCs cultured in glass bottom cell culture dishes (NEST, Jiangsu, China) were fixed with 4% paraformaldehyde (Merck, Schwalbach, Germany) for 1 h. Then, the cells were incubated with 1% Triton X-100 (Sigma, Missouri, USA) for 15 min. After washing three times, DCs were then incubated with 300 μL anti-β-tubulin (10 μg/mL, Abcam, Cambridge, UK) at 4 °C for 12 h. The cells were incubated with rhodamine-conjugated phalloidin (50 μg/mL, Thermo Fisher, Massachusetts, USA) and 488-conjugated goat anti-rabbit IgG (2 μg/mL, Abcam, Cambridge, UK) for 60 min after washing. After washing, the cells were incubated with DAPI medium to stain the nuclei. Confocal laser-scanning microscopy (PerkinElmer, Massachusetts, USA) was used to view cells.
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7

Western Blot Protein Analysis Procedure

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Western blot analysis was carried out as described (Corno et al., 2017 (link)). Briefly, samples were fractionated by SDS-PAGE and blotted on nitrocellulose membranes. Blots were pre-blocked in PBS containing 5% (w/v) dried no fat milk, and then incubated overnight at 4°C with the following antibodies: anti-phospho-Akt (Ser473), anti-Akt (BD Science, Franklin Lakes, NJ, United States), anti-phospho-ERK1/2 (Thr202/Tyr204, Thr185/Tyr187), anti-ERK1/2, anti-AR (Millipore, Burlington, MA, United States); anti-Hsp90 (ac-Lys294) (Novus, Centennial, Colorado, United States), anti-Hsp90 (Santa Cruz Biotechnology, Dallas, TX, United States), anti-acetylated alfa-tubulin (Sigma-Aldrich, Milan, Italy), anti-Bax and anti-FLIPL (Sigma-Aldrich, Milan, Italy), anti-p53 (Dako, Santa Clara, CA, United States), anti-cleaved caspase-3 (Asp175) and anti-cleaved caspase-7 (Asp198) (Cell Signaling, Danvers, MA, United States). Anti-vinculin (Sigma-Aldrich, Milan, Italy), anti-β-tubulin (Abcam, Cambridge, United Kingdom) or anti-actin (Sigma) antibodies were used as control for loading. Antibody binding to blots was detected by chemo-luminescence (Amersham Biosciences, Cologno Monzese, Italy). Three independent experiments were performed.
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8

Antibody and Reagent Procurement for Cell Study

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Peroxidase-conjugated affinipure goat anti-rabbit IgG was purchased from Proteintech, United States. Rabbit monoclonal anti-LC3 antibody, anti-β-tubulin and anti-Rab5c were purchased from Abcam, United States. Hoechst 33342 and Rap were purchased from Sigma-Aldrich. The fluorescent label, Alexa Fluor 647 and 4% paraformaldehyde were purchased from Invitrogen. The lipophilic dye, DiO was purchased from Biotium, United States. The SGIV polyclonal anti-MCP antibody was prepared in our laboratory. The labeled si-EcRab5c sequence is listed in Supplementary Table 1, and was synthesized by GenePharma, China.
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9

Protein Expression Analysis in Cancer Cell Lines

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A375, A375-GFP-PMCA4b, A375-GFP-PMCA4b-LA, MCF-7, MCF-7-GFP-4b, and MCF-7-Sh-PMCA4b cells were cultured in a 6-well plate for 48 h. The total protein content of the cells was precipitated with 6% TCA. Samples were separated by using 10% or 15% acrylamide gels, as appropriate, and electroblotted onto PVDF membranes (Biorad, Hercules, CA, USA), as described previously [28 (link)].
Blots were immunostained with the following rabbit monoclonal primary antibodies: antivinculin (1:100, ThermoFisher scientific, cat. # 700062), anti-P-cofilin (Ser3) (1:1000, Cell Signaling Technology, Danvers, MA, USA, cat. # 77G2), rabbit polyclonal antibody: anti-β-tubulin (1:1000, Abcam, cat. # ab6046), anti-PMCA1 (1:1000, Affinity BioReagents, cat. # PA1-914), mouse monoclonal antibodies: anti-PMCA4 (JA9, 1:1000, Sigma-Aldrich, cat. # P1494), anti-NA+/K+ ATPase (1:2000, Enzo Life Sciences, cat. # BML-SA247), and chicken polyclonal antibody: anti-GFP (1:5000, Aves, GFP-1020). Horseradish peroxidase-conjugated anti-rabbit, anti-mouse, or anti-chicken secondary antibodies were used for detection (Jackson ImmunoResearch, dilution 1: 10,000) and were visualized with Pierce ECL Western Blotting Substrate (Thermo Scientific). The ImageJ software was used for densitometry analysis.
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10

Western Blot Analysis of Amyloid-β and Ubiquitin

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Proteins were resolved on 8%, 10%, 15%, or 4-20% tris-glycine gels, and for amyloid-β or Ub immunoblotting 16% tris-tricine gel was used62 (link), transferred to nitrocellulose membranes (GE Whatman, 0.2 µm Pore Size). Western blot images were visualized by enhanced chemiluminescence (ECL). The images were captured by using an ImageQuant™ LAS 4000 imaging system (GE Healthcare) and quantitated by Image Studio™ Lite (LI-COR Biosciences). Primary antibodies were used at the following dilutions: 6E10 anti-amyloid-β (1:1000, Biolegend, Cat. no. 803015); anti-PSEN1 (1:1,000, Cell Signaling Technology, Cat. no. 5643); anti-β-tubulin (1:1,000, Abcam, Cat. no. AB24629); anti-UBB+1 (1:1000, custom made by Sigma for our lab), anti-ubiquitin (1:2000, DAKO, Cat. no. Z0458), anti-UCH-L1 (1:1000, Abcam, Cat. no. ab8189), anti-GAPDH (1:10,000, Sigma, Cat. no. G9545), anti-β-actin (1:10,000, Santa Cruz, Cat. no. sc-47778).
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