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In situ cell death assay kit

Manufactured by Roche
Sourced in Germany, United States

The In situ cell death assay kit is a laboratory tool designed to detect and quantify cell death within a tissue sample. It provides a standardized, reliable method for analyzing apoptosis and other forms of programmed cell death in a wide range of experimental models.

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16 protocols using in situ cell death assay kit

1

Quantifying Myocardial Apoptosis via TUNEL

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Myocardial apoptosis was detected as myocardial tissue sections were assessed via the in situ cell death assay kit (Roche Applied Science, Mannheim GmbH, Penzberg, Germany) TUNEL staining. Next, the apoptotic nucleus and myocardial nucleus were stained with TUNEL or 4’, 6-diamidino-2-phenylindole. Apoptotic rate was calculated as number of TUNEL-positive apoptotic myocardial cells/total number of myocardial cells ×100% (21 (link), 28 (link), 29 (link)).
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2

Immunofluorescent Staining of Brain Tissue

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Tissue sections were prepared as described above. The sections were incubated at 4°C overnight with primary antibodies against the following proteins: NeuN (anti-rabbit, 1 : 50, Proteintech, Wuhan, China), GFAP (anti-rabbit, 1 : 1000, Servicebio, Wuhan, China), and Iba1 (anti-rabbit, 1 : 500, Servicebio, Wuhan, China). Then, the sections were incubated with CY3-labeled goat anti-rabbit (1 : 300, Servicebio, Wuhan, China) fluorescent secondary antibody at room temperature for 50 min. TUNEL staining was then carried out using an in situ cell death assay kit (Roche, Mannheim, Germany). Nuclei were counterstained using DAPI (Servicebio, Wuhan, China). The sections were observed under a fluorescence microscope (Olympus).
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3

Measuring DNA Fragmentation in iPSCs

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DNA fragmentation was measured using an in situ cell death assay kit (Roche) for visualization of DNA strand breaks by labelling the free 3′-OH termini with modified nucleotides (for example, biotin-dUTP, DIG-dUTP, fluorescein-dUTP) in an enzymatic reaction. iPSC cells (1 × 105 cells) were treated with phleomycin (30 μg ml−1) for 2 h. Samples were collected as control or treated for analysis 15 h after phleomycin treatment. Additionally, cells were treated with DNase I recombinant (Roche) (10 min, 3 U ml−1, at 15 °C to 25 °C) to induce DNA strand breaks, as a positive control for apoptosis. Medium containing floating cells and attached cells was centrifuged (1,000 g, 5 min) and collected. Cells were processed for fluorescence microscopy.
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4

TUNEL Staining for Cell Death Analysis

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In Situ Cell Death Assay Kit (Roche, Mannheim) was utilized to perform TUNEL staining. Briefly, the sections were rehydrated as described in the immunofluorescence staining procedure. After 30 min of incubation at room temperature and two washes with PBS, proteinase K solution was subsequently added. Next, the samples were incubated for 30 min at room temperature and then washed twice with PBS. Each sample was incubated for an additional 10 min with diaminobenzidine (DAB). Before mounting coverslips, glycerol was applied. Cells positive for TUNEL were counted using the formula TUNEL/DAPI × 100%.
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5

Quantifying Tumor Cell Apoptosis by TUNEL Assay

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Tumor cell apoptosis was detected by in situ cell death assay kit according to the manufacturer’s instructions (Roche, Mannheim, Germany) using TUNEL assay. In brief, the tumor tissue embedded in paraffin was cut into 5 μm-thickness pieces. After that, paraffin section was dewaxed with xylene for 20 min and hydrated with gradient ethanol (100%, 95%, 90%, 80% and 70%). Then, the sections were washed with PBS for three times and permeable with proteinase K at 37°C for 20 min. Thereafter, the sections were fixed with 4% paraformaldehyde for 15 min at room temperature and blocked with 3% H2O2 for 10 min. After washing with PBS for three times (5 min per time), the sections were incubated with TUNEL reagent at 37°C for 1 hr. Whereafter, the labeled DNA was observed using a peroxidase-conjugated anti-fluorescein antibody. The percentage of tunel positive cells to the total number of cells is considered to be the apoptotic rate.
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6

In Situ Apoptosis Assay of Human SSCs

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An In Situ Cell Death Assay Kit (Roche, Mannheim, Germany) was used to evaluate apoptosis in the human SSC line transfected with MAP4K4 siRNAs. Cells were treated with proteinase K (20 mg/mL) for 15 min, followed by incubation with dUTP-labeled/terminal deoxynucleotidyl for an hour in the dark with dUTP-labeled/TdT enzyme buffer. Cell nuclei were stained with DAPI. Cells without TdT enzyme but with PBS were used as NC, and at least 500 cells/sample were assessed by Leica fluorescence microscopy.
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7

TUNEL Assay for Hippocampal Cell Death

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TUNEL assays were performed according to the protocol using an in situ cell death assay kit (Roche, Basel, Switzerland). Sections were re-stained with anti-NeuN antibody (1:200; Merck Millipore, Hong Kong, China) for 3 min. Tunel-positive cells were counted in six different microscopic fields from the CA1 region of each section of the hippocampus and the percentage was calculated.
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8

TUNEL Assay for Renal Cell Death

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According to the manufacturer’s protocol, a commercial kit (in situ cell death assay kit; Roche, Basel, Switzerland) for terminal deoxynucleotidyl transferase-mediated dUTP nick-end labeling (TUNEL) assay was used on paraffin sections of the renal cortical medulla border region. All cells were counted in five different views per section. TUNEL-positive cells were expressed as percentage of total cells.
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9

Apoptosis Signaling Pathway Analysis

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LPS (from Escherichia coli, 055:B5) and D-Gal were the purchased from Sigma (St. Louis, MO, USA). ELISA kits for detecting the mouse tumor
necrosis factor alpha (TNF-α) and IL-6 were purchased from Neobioscience (Shenzhen, China). Assay kits for measuring alanine aminotransferase (ALT) and
aspartate aminotransferase (AST) were purchased from Nanjing Jiancheng Bioengineering Institute (Nanjing, China). A kit for extracting tissue proteins and assay
kits for determining the activities of caspase 3, caspase 8 and caspase 9 were purchased from Beyotime Biotechnology Institute (Jiangsu, China). An in situ cell
death assay kit for the determination of apoptotic cells was purchased from Roche (Indianapolis, IN, USA). Antibodies against cleaved caspase 3, c-Jun
N-terminal kinase (JNK), phosphorylated JNK (p-JNK), and β-actin were purchased from Cell Signaling Technology (Danvers, MA, USA). A BCA Protein Assay Kit for
determining the concentration of proteins, horseradish peroxidase-conjugated goat anti-rabbit antibody, and enhanced chemiluminescence (ECL) reagent were
purchased from Pierce Biotechnology (Rockford, IL, USA).
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10

Murine Model of LPS-Induced Liver Injury

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Male BALB/c mice (6–8 wk old, 18-20 g) were provided by the Experimental Animal
Center of Chongqing Medical University. LPS (Escherichia coli,
055:B5), d-GalN and luzindole were purchased from Sigma–Aldrich (St
Louis, MO). The mouse TNF-α and IL-6 ELISA kits were purchased from
NeoBioscience (Shenzhen, PR China). The alanine aminotransferase (ALT) and
aspartate aminotransferase (AST) assay kits were products from the Nanjing
Jiancheng Bioengineering Institute (Nanjing, PR China). The Total Protein
Extract Kit and the Caspase-3, -8, -9 Colorimetric Assay Kit were products from
Beyotime Biotechnology Institute (Jiangsu, PR China). The in
situ
cell death assay kit was from Roche (Indianapolis, IN). The
Abs against cleaved caspase-3, poly(ADP-ribose) polymerase (PARP) and β-actin
were obtained from Cell Signaling Technology (Danvers, MA). The HRP goat
anti-rabbit Ab, the BCA Protein Assay Kit and the enhanced chemiluminescence
(ECL) reagent were from Pierce Biotechnology (Rockford, IL).
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