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22 protocols using ary005b

1

Membrane-Based Cytokine Profiling

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To detect an array of membrane-based cytokines and chemokines in human (BEAS-2B, HFL-1, and U937) and mouse cell (RAW264.7) supernatants, R&D systems ARY005B and ARY006 proteome profiler array kits were used respectively. Samples were pooled together to obtain 1.5 mL per treatment group or control group. Then, the prepared detection antibody cocktail was added to the samples. Subsequently, the samples were added to the membranes and incubated overnight. Membranes were then incubated with streptavidin-HRP prior to the addition of chemi reagent or detection ECL. Membranes were then exposed using the BioRad chemi-doc. The blots were quantified using the protein array analyzer on ImageJ software.
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2

Profiling Inflammatory Markers in CM

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CM generated from NB cells (CHLA-255), CAF-MSC, BM-MSC, NB/CAF-MSC and NB/BM-MSC were examined for the presence of 36 different inflammatory markers using a Human Cytokine Array (R&D System ARY005B) according to the manufacturer’s instructions. Briefly, membranes were incubated with 2 ml of CM and a cocktail of biotinylated antibodies overnight at 4°C. Following three washes, membranes were incubated in the presence of 2 ml (1:2000 dilution) of streptavidin-horseradish peroxidase (HRP) for 30 minutes at room temperature and the presence of immunocomplexes was detected by staining with 3,3′-diaminobenzidine (DAB) chromogen. Arrays were scanned and pixel density measurements were obtained using the array analysis software of LI-COR Biosciences.
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3

Cytokine Profiling in Cardiomyocyte Hypoxia

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Determination of various cytokines, chemokines and growth factors in supernatants from cardiomyocytes under normoxia or intermittent hypoxia was performed by the proteome profiler array, human cytokine array Cat. ARY005B, R&D systems Inc. Densitometry was performed with an Azure c300 Gel Imaging System by Azure Biosystems and analyzed with the ImageJ software version 1.53e, https://imagej.nih.gov/ij/ 24 March 2022. In the membranes, each protein was doted in duplicate. The duplicate densitometry values were averaged and compared to the average values obtained in the normoxia membrane immediately after IH or compared to normoxia after 24 h recovery. The results were expressed as a percentage of each protein compared to normoxia.
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4

Evaluating Cytokine Profiles in TIM-3 Overexpressing Cells

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GSC40 cells transduced with TIM-3 overexpression or control lentiviral vectors were seeded into 6-well plates at a density of 1×106 cells in 1.5 mL F12 medium without B27 supplement, EGF, basic-FGF, penicillin/streptomycin (Gibco) per well. After culture at 37°C with 5% CO2 for 24 hours, the medium was collected by centrifugation and then measured with proteome profiler human cytokine array method (ARY005B, R&D), following manufactures’ instructions. Protein expression was quantified using Image J software.
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5

Cytokine Profiling of Microglial Cells

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Cell culture supernatants collected from microglial cells at 24h and 48h post ssRNA40, ssRNA41 or vehicle treatment were used for quantification of cytokines using ELISA. Human IL-1β (R&D systems Cat# DLB50), human IL-18 (eBioscience Cat# BMS267–2), humanIL-1 alpha (eBioscience Cat# BMS243–2), human TNF-alpha (eBioscience Cat# BMS223–4), human complement C1q (Abcam Cat# ab170246) production were quantified by ELISA in these culture supernatants. These cell culture supernatants were also analyzed for relative levels of selected cytokines and chemokines using a membrane-based antibody array (R&D Systems Cat# ARY005B) following manufacturer’s instructions.
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6

Profiling Human Cytokine Levels

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A cytokine assay was performed using the human cytokine array kit (ARY005B, R&D Systems) following the protocol in the user’s manual as described in “Supplementary Materials and Methods”.
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7

Cytokine Profiling in Conditioned Media

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The relative level of secreted cytokines and chemokines in the conditioned media was detected by a human cytokine array kit (ARY005B from R&D Systems), following the manufacturer’s protocol. Generally, about 0.9 mL of conditioned media from control and impact samples were respectively mixed with the array buffer and a cocktail of biotinylated detection antibodies. The mixture was then added to the cytokine array membrane and incubated at 4 °C overnight. After washing off the unbound material, streptavidin-HRP solution and chemiluminescent detection reagents were added to the membrane in sequence. The developed films with all the positive signals were scanned and transformed into images. The pixel density was analyzed with ImageJ software.
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8

Cytokine Profiling of Cell Lines

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Secreted cytokine levels, normalized to the total cell number, were measured in the supernatant of cell lines after 4 days growth, using the human cytokine array (R&D Systems, ARY005B) and human quantitative IL-1α and CXCL1 ELISA kits (R&D Systems, DY200 and DY275) according to the manufacturer’s instructions.
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9

Cytokine Profiling in GBM-Microglia Assembloid

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Upon GBM-microglia assembloid model construction, 1 mL of conditional media were collected for cytokine detection. The relative expression of cytokines were assessed by the human cytokine array kit following the manufacturer’s protocol (ARY005B, R&D systems). Briefly, the nitrocellulose membranes printed with anti-cytokines antibodies were blocked with Array Buffer 4. After blocking, the membranes were incubated overnight at 40C with the sample/antibody mixture containing conditional media, detection antibody cocktail, and array buffer 4. After washing thoroughly, the membranes were incubated with streptavidin-HRP diluted in Array Buffer 5. The membranes were washed again, followed by the incubation with Chemi Reagent Mix. After incubation, the chemiluminescence were detected and the pixel density of signals were analyzed by ImageJ (NIH, Bethesda).
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10

Cytokine Profiling of CD19-CAR-T Cell Interaction

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CD19-CAR-T cells were washed with RPMI medium supplemented with 5% human serum, 1% glutamax, 1% MEM-NEAA, 1x penicillin/streptomycin (R-5 medium), then resuspended in R-5 medium at a concentration of 1 million/mL. Stage 7 β-like cells differentiated from INS: tdT, INS:CD19, or INS:CD19; PDL1 PSCs were washed with PBS-. Then R-5 medium with different numbers of CD19-CAR-T cells were added to β-like cells based on designated E/T ratios. After overnight coculture, medium samples were collected and centrifuged at 1500 g for 5 min, and the supernatant were analyzed with human cytokine array (R&D ARY005B) based on the manufacturer’s instructions. Cytokines showing difference between CD19-CAR-T cells cocultured with INS:tdt β-like cells and INS:CD19 β-like cells were selected to for quantification with a Luminex assay (custom assay from R&D to analyze IL2, TNFalpha, INFgamma, GM-CSF, CCL3, CCL4, and CCL5) with a Bio-Rad Bioplex3D Luminex equipment with the cytokine standards and suggested settings provided by the manufacturer.
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