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21 protocols using dulbecco s modified eagle s medium dmem

1

Molecular Mechanisms of Nrf2 Regulation

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HT (purity ≥98%) was obtained from Extrasynthese (Lyon, France). Dulbecco's modified Eagle's medium (DMEM) was from BiochromAG (Berlin, Germany). RNA was isolated using the RNeasyPlus Mini kit (Qiagen, Hilden, Germany) and cDNA was prepared with Maxima First Strand cDNA Synthesis Kit for RT-qPCR (Fermentas Intl., Vilnius, Lithuania). Real-time PCR was performed using SYBR Fast Master Mix (2x) Universal (KAPABiosystems, Massachusetts, USA). Primers were synthesized by Biomedal S.L. (Sevilla, Spain). Nrf2 siRNA (sc-37049), scramble siRNA (scr siRNA) and the transfection reagent were from Santa Cruz Biotechnology (CA, USA). Opti-MEM reduced serum medium was bought from Thermo Fisher Scientific. α-Tubulin antibody, foetal bovine serum (FBS), sulforhodamine B (SRB), trichloroacetic acid (TCA), 2´,7´-dichlorofluorescin diacetate (DCFH-DA), glutathione reductase (GR), reduced glutathione, NADPH, cumene hydroperoxide, and other general reagents were from Sigma (St. Louis, MO, USA). Heme oxygenase-1 (HO-1) was measured with the enzyme linked immunosorbent assay (ELISA) kit CSB-E08266h from Cusabio (Barksdale, USA). Primary antibodies (PGC-1α, Nrf2, ERRα, SIRT3) were purchased from Santa Cruz Biotechnology, Inc., (CA, USA) except anti-α-tubulin (Sigma, St. Louis, Mo, USA).
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2

Stable Overexpression of hOCT2 in HEK293 Cells

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Human embryonic kidney (HEK293) cells stably overexpressing hOCT2 WT or hOCT2 Ala270Ser and empty vector transfected cells were generated using T-RexTM HEK293 cells and the Flp-InTM system (Invitrogen, Karlsruhe, Germany) as described previously [17 (link),18 (link)]. Experimental details can be found in Reference [18 (link)]. Culture and function of these cells were approved by the state government Landesumweltamt Nordrhein-Westfalen, Essen, Germany (no. 521.-M-1.14/00).
Cells were grown in Dulbecco’s Modified Eagle’s Medium (DMEM) (Biochrom, Berlin, Germany) containing 10% fetal bovine serum (FBS, Biochrom), 1% penicillin/streptomycin (Biochrom), 10% L-glutamine (Biochrom), and hygromycin B (50 µL/ 50 mL; Roche, Mannheim, Germany) at 37 °C and 8% CO2 in 25-cm2 cell culture flasks (Greiner, Frickenhausen, Germany). For functional measurements, cells were transferred to 96-well plates (Greiner). Cells from passages 5–35 were used in the experiments.
Immunofluorescence was used to show hOCT2 expression in hOCT2 cells and controls (see Supplementary Figures S1 and S2).
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3

Isolation and Multilineage Differentiation of Human Adipose-Derived Stem Cells

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Human adipose tissue derived stem cells (hASCs) were sourced from patients undergoing liposuction procedures or tummy tuck at the Department of Hand, Plastic and Aesthetic Surgery of the Ludwig-Maximilians-University. Written informed consent was obtained by all patients prior to the operations. The study was approved by the institutional ethics committee with registration number 17-046. The isolation protocol from Bunnell et al.23 (link)
was modified, by not using a lysis buffer. The cells were expanded in standard culture medium (Dulbecco’s modified Eagle’s medium (DMEM): #11971-025, Biochrom, Germany) supplemented with 10% fetal bovine serum (FBS: INV10270-106 Gibco, Thermo Fisher Scientific, USA), 1% Pen/Strep (A2213, Biochrom, Germany), and 1% Amphotericin B (A2612, Biochrom, Germany). To ensure that the cells isolated from the lipoaspirate were ASCs, their multilineage potential was confirmed by differentiating into adipogenic, osteogenic, and chondrogenic cells with StemMACS™ differentiation medium (Miltenyi Biotec, Germany).
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4

Quantification of Paralytic Shellfish Toxins

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Plastic tissue-culture dishes were purchased from Falcon (Madrid, Spain). Foetal bovine serum was obtained from Gibco (Glasgow, UK) and Dulbecco's Modified Eagle's medium (DMEM) was from Biochrom (Berlin, Germany). All other chemicals were reagent grade and purchased from Sigma-Aldrich (Madrid, Spain). Certified toxin standards were obtained from the Institute for Marine Bioscience, National Research Council of Canada (NRCC, Halifax, Nova Scotia, Canada): STX, NeoSTX, GTX1,4, GTX2,3, C1,2, GTX5, dcSTX, dcNeo, and dcGTX2,3. Reagents were of analytical grade and solvents were HPLC grade. Primary toxin standards were prepared to have concentrated stock standard solutions and stored following NRCC recommendations. To perform oxidation of the extracts and quantitation, toxin standard mixes (I-IV) were prepared as recommended [20 ] and are illustrated in Table 1.

Toxin standard mixes used in this study.

Table 1
Toxin mixtureToxins
IdcGTX2,3, dcSTX, STX (for peroxide oxidation)
IIC1,2, GTX2,3, GTX5 (for peroxide oxidation)
IIINeoSTX, GTX1,4 (for periodate oxidation)
IVdcNeoSTX (for periodate oxidation)

Abbreviations.

STX: Saxitoxin.

C 1,2: C-toxins 1 and 2.

NeoSTX: neosaxitoxin.

dcSTX: decarbamoyl saxitoxin.

dcGTX: decarbamoyl gonyautoxins.

dcNeoSTX: decarbamoyl neosaxitoxin.

GTX: gonyautoxins.

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5

Glioma Cell Lines and Primary Astrocyte Culture

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Rodent glioma cell line F98, the human glioma cell line U87, and the murine glioma cell line GL261 were obtained from ATCC/LGC (Wesel, Germany). The human glioma cell line U251 was provided by Yvonne Ruebner and Rainer Fietkau (Department of Radiation Therapy, Erlangen University Hospital). Primary rat astrocytes were prepared from up to 1-month-old Wistar rats. All cells were cultured under standard humidification conditions (37°C, 5% CO2) with Dulbecco's modified Eagle's medium (DMEM; Biochrom, Berlin, Germany) supplemented by 10% fetal bovine serum (Biochrom), 1% penicillin/streptomycin (Biochrom), and 1% glutamax (Gibco/Invitrogen, Darmstadt, Germany). Cells were passaged at ∼80% confluence. Cells were scrapped of or trypsinized after the phosphate buffered saline (PBS) wash step. Cells were plated out in a culture flask after centrifugation (900 rpm for 5 min).
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6

Optimizing PLGA Nanoparticle Fabrication

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Poly (DL-lactide-co-glycolide) (PLGA) Resomer RG 502H and Poly(DL-lactide-co-glycolide)-co-polyethylene glycol diblock Resomer RGP d50155 were obtained from Evonik Industries AG (Darmstadt, Germany). Polyvinyl alcohol (PVA) 30,000–70,000 Da and didodecyldimethylammonium bromide (DMAB) were purchased from Sigma Aldrich (Steinheim, Germany).
For cell culture experiments Dulbecco’s modified Eagle’s medium (DMEM) and all used supplements were received from Biochrom AG (Berlin, Germany). VECTASHIELD Mounting Media with DAPI (4′,6-Diamidin-2-phenylindol) was purchased from Vector Laboratories Inc. (Burlingname, USA) and Wheat germ agglutinin (WGA) AlexaFluor 350 from Life Technologies (Carlsbad, USA). All other chemicals were obtained from Roth (Karlsruhe, Germany).
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7

Electrochemical PSA Detection in Renal Cells

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The renal cell line Vero was originally obtained from LGC Standards (Teddington, Middlesex, UK). Dulbecco’s Modified Eagle’s Medium (DMEM), l-alanine-glutamine, fetal bovine serum (FBS), penicillin/streptomycin and trypsine/EDTA were purchased from Biochrom Ltd. (Cambridge, UK). The PSA antibody and all other reagents were ordered from Sigma-Aldrich (Munich, Germany). Thirty nine whole blood samples with PSA values measured by IRMA technique in the range from zero up to 224.4 ng/mL, were collected from an equal number of patients at Army Share Fund Hospital of Athens. Prior to assay, samples were stored at −20 °C for one up to three months. All the screen printed electrodes were provided from DropSens (Llanera, Asturias, Spain).
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8

Isolation and Treatment of Glomeruli

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Glomeruli isolation was carried out as described by Sharma et al. 20. Briefly, a high mid‐line incision on the abdomen exposed the abdominal cavity and total bilateral nephrectomy was performed to anesthetized animals. The kidney capsules were removed, and glomeruli were isolated following consecutive passage of the mashed cortexes through screens of 80‐ and 200‐mesh size. Glomeruli were recovered from atop the 200‐mesh screen into Dulbecco's modified Eagle's medium (DMEM; Biochrom Gmb, Berlin, Germany) supplemented with 10% foetal calf serum (FCS; Biochrom Gmb),15 mM HEPES (Biochrom Gmb), 5 mg/ml insulin‐transferrin‐sodium selenite (ITS; Sigma‐Aldrich), 50 nM dexamethasone (Sigma‐Aldrich), 2 mM glutamine (Biochrom Gmb) and 5 mM or 25 mM D‐glucose (Sigma‐Aldrich) and incubated at 37°C in a 5% (v/v) CO2 humidified chamber for 4 or 8 days. The isolated rat glomeruli were treated with 150 nM or 300 nM paricalcitol (VDRA; Abbott, Hellas (BGP, Attika, Greece)) for 4 days in presence of normal (5 mM) or high (25 mM) glucose levels.
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9

C2C12BRELuc Reporter Cell Line Protocol

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The C2C12BRELuc reporter cell line [41 (link)] was generated by the Inman group and used in this study. In this cell line, the luciferase (Luc) reporter is under the control of the BMP response elements (BRE) of the Id1 gene. C2C12BRELuc were cultivated in culture medium (Dulbecco’s modified Eagle’s medium (DMEM) supplemented with 10% heat-inactivated fetal bovine serum (FBS) and antibiotics (100 U/mL penicillin and 100 μg/mL streptomycin, all from Biochrom AG, Berlin, Germany). C2C12BRELuc cells were passaged twice per week in a 175 or 225 cm2 cell culture flask. The cultivation media was supplemented with the antibiotic G418 (0.7 mg/mL) to select for the BREluc-positive C2C12BRELuc cells in accordance with previous studies [41 (link)].
C2C1BRELuc cells were sub-cultivated at a ratio of 2.5–5 × 104 cells per mL of culture medium. DMEM, antibiotics, FBS, and trypsin (Biochrom AG, Berlin, Germany) were used in cell cultivation and passaging. To ensure the viability and to calculate cell number, the metabolic activity of cells was calculated through Presto Blue® assay (Invitrogen by Life Technologies Co., Carlsbad, CA, USA). BMP2 was purchased from Osteogenetics (Würzburg, Germany). H89 was purchased from AbCam (Cambridge, UK). Deta NONOate, SNAP, YC-1, LY83583, LDN-193189, and IBMX were purchased from Cayman Chemical (Ann Arbor, MI, USA).
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10

Antioxidant and Cytotoxicity Assays

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Doxorubicin, superoxide dismutase (SOD), iron chloride (FeCl3), nitro blue tetrazolium (NBT), ascorbic acid (AA), catalase (CAT) from bovine liver, acetaminophen (APAP), 2,2′-Diphenyl-1-picrylhydrazyl (DPPH), n-alkanes (C6–C30), thiobarbituric acid (TBA), trichloroacetic acid (TCA), ethylenediaminetetra acetic acid (EDTA), nicotinamide-adenine dinucleotide phosphate (NADPH), butylated hydroxytoluene, gallic acid, sodium carboxymethyl cellulose (CMC), phenazine methosulfate, Folin–Ciocalteu reagent, reduced glutathione (GSH), and 1,2-dithio-bis nitro benzoic acid (DTNB) were purchased from Sigma Co. (St. Louis, MO, USA). Dimethyl sulfoxide (DMSO) was purchased from Merck (Merck, Darmstadt, Germany). Streptomycin, Dulbecco’s modified Eagle’s medium (DMEM), and Streptomycin were purchased from Biochrom (Biochrome AG, Berlin, Germany, A 321-44). Fetal bovine serum was purchased from Sigma (Sigma, Darmstadt, Germany). Potassium phosphate monobasic, sodium pyrophosphate dibasic, sodium carbonate (Na2CO3), disodium hydrogen phosphate (Na2HPO4), hydrogen peroxide (H2O2), potassium ferricyanide (K3Fe(CN)6), sodium sulphate anhydrous (Na2SO4), acetic acid (ACA), and n-butanol (99.8%) were of analytical grade and purchased from Merck (Nottingham, UK).
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