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Rt qpcr primers

Manufactured by Thermo Fisher Scientific
Sourced in China

RT-qPCR primers are oligonucleotide sequences designed to specifically amplify and detect target DNA or RNA sequences during real-time quantitative reverse transcription polymerase chain reaction (RT-qPCR) analysis. They are a critical component in the RT-qPCR process, enabling the selective and sensitive quantification of gene expression levels or the detection of specific nucleic acid targets.

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4 protocols using rt qpcr primers

1

RT-qPCR of Schizochytrium sp. FJU-512

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RT-qPCR primers (Invitrogen, Beijing, China) specific for individual target genes are listed in Supplementary Table 1. RT-qPCR was performed using ABI 7500 Real-Time PCR instrument (Applied Biosystems, Foster City, CA, United States). PrimeScript™ RT reagent kit with gDNA Eraser (TaKaRa, Dalian, China) was used for first-strand cDNA synthesis. Real-time PCR was carried out with the first-strand cDNA template following the manufacturer’s instructions; 18S rRNA gene of Schizochytrium sp. FJU-512 served as the internal control.
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2

Quantitative Analysis of Liver Fibrosis Markers

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TRIzol reagent (Invitrogen, USA) was employed to extract total RNA from LX-2 cells, liver tissues and HSCs on the basis of the standard instructions. NanoDrop 2000 spectrophotometer (Thermo Scientific, USA) was used to estimate total RNA concentration [24] . Later, a Reverse Transcription Kit (Fermentas, USA) was adopted to synthesize complementary DNA (cDNA) from RNA. Next, real-time-quantitative polymerase chain reaction (RT-qPCR) of Vimentin, SMAD4, and α-SMA was conducted using SYBR-Green Master Mix Kit (TaKaRa, Japan) with RT-qPCR primers (Invitrogen, USA). Then, miR-324-3p was detected by one-step miRNA RT-qPCR (Biomics, China). Besides, glyceraldehyde-3-phosphate dehydrogenase (GAPDH) and β-actin were used to normalize the mRNA ratios. The primer sequences are shown in Table 1.
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3

Quantitative RT-PCR for mRNA and miRNA Analysis

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Total RNA from tissues and cells was extracted using TRIzol® reagent (Invitrogen; Thermo Fisher Scientific, Inc.) and RNA concentration was estimated using a NanoDrop spectrophotometer (NanoDrop Technologies; Thermo Fisher Scientific, Inc.). The RT-qPCR primers were obtained from Invitrogen (Thermo Fisher Scientific, Inc.). cDNA was synthesized from total RNA and the relative mRNA and non-coding RNA levels were determined using a RT kit (Toyobo Life Science). The expression levels of miR-29a-3p were determined by normalization to U6 small nuclear RNA by the 2−ΔΔCq method (34 (link)). An ABI 7500 Sequence Detection System (Thermo Fisher Scientific, Inc.) and SYBR-Green Real-Time PCR Master Mix (Toyobo Life Science) were used to perform RT-qPCR according to the manufacturer's instructions. A total of 20 µl PCR reaction mixture consisting of 1 µl reverse primers, 1 µl forward primers, 10 µl SYBR-Green Master Mix, 6 µl DEPC and 2 µl synthesized cDNA was used. GAPDH was used as an internal control. RT was performed as follows: 25°C for 10 min, 37°C for 120 min, 85°C for 15 min, then 4°C. PCR conditions were as follows: 94°C for 5–10 min, followed by 40 cycles of 95°C for 15 sec, 60°C for 15 sec and 72°C for 45 sec and final extension at 72°C for 2–3 min. LASP1 expression levels were normalized to those of GAPDH using the 2−ΔΔCq method. The primer sequences are listed in Table I.
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4

Rutaecarpine Molecular Characterization

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Rutaecarpine (MW: 287.32; purity: HPLC ≥ 98%) was purchased from Nanjing Zelang Biotechnology Co., Ltd. (Jiangsu, China); BCA assay kit was purchased from Beyotime Biotechnology Co. Ltd. (Jiangsu, China); α-actin and calcineurin antibodies were purchased from Abcam (Cambridge, MA, USA); 4′, 6-diamidino-2-phenylindole (DAPI) was purchased from Sigma-Aldrich (St. Louis, MO, USA); angiotensin II radioimmunoassay kit was purchased from Beijing North Institute of Biological Technology (Beijing, China); calcineurin activity kit was purchased from Nanjing Jiancheng Biology Engineering Institute (Shanghai, China); RT-qPCR primers were custom-synthesized and purified by Invitrogen (Shanghai, China). All other reagents were from commercial suppliers and were of standard biochemical quality.
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