The largest database of trusted experimental protocols

56 protocols using ab7970

1

Thyroid Tissue Analysis: Measuring Free T4 and NF-κB

Check if the same lab product or an alternative is used in the 5 most similar protocols
Venous blood samples were collected in microtubes and centrifuged (5000 rpm for 5 min 4 °C). The serum fraction was kept at −80 °C. Free T4 (fT4) was measured using the fT4 ELISA kit (DiaMetra) following the manufacturer’s instructions. T4-conjugated HRP and TMB substrate system were used for quantification.
For microscopy, thyroids (1 lobe) were embedded in paraffin. 4 µm sections were stained with hematoxylin and eosin (Sigma-Aldrich) according to the manufacturer’s instructions. For immunoperoxidase, target retrieval was performed in TEG buffer pH 9.2, as already described51 (link). Briefly, primary antibody anti-p65 (Abcam, ab7970, 1:500) was incubated overnight at 4 °C followed by incubation with the secondary anti-rabbit HRP-conjugated antibody (Dako, P0488, 1:200). Chromogenic reactions were carried out with DAB Peroxidase Substrate Kit (Vector Laboratories). For immunofluorescence analysis, thyroid sections were incubated overnight at 4 °C with anti-p65 primary antibody (Abcam, ab7970, 1:500). Sections were then incubated with secondary Alexa Fluor 488 antibody (Invitrogen); 1 μg/ml DAPI solution was used as nuclear counterstain. Zeiss Axioplan 2 microscope was used for images acquisition (20x and 63x magnification).
+ Open protocol
+ Expand
2

Intracellular Localization of NF-κB in RA-FLSs

Check if the same lab product or an alternative is used in the 5 most similar protocols
To determine the intracellular localization of NF-κB, immunofluorescence staining of p65 (ab7970; Abcam, Cambridge, England) in RA-FLSs was performed. In brief, RA-FLSs (1 × 105 cells per well) were seeded into an eight-well chamber (Thermo Fisher Scientific) and grown to 80% confluence for 24 h. Recombinant human ORM2 (1 μg/mL; Prospec-Tany TechnoGene Ltd., Rehovot, Israel) was added to each well and incubated for 1 h. Cells were fixed with formaldehyde for 10 min and permeabilized with 0.1% Triton X-100 for 3 min at room temperature. After blocking with 10% normal donkey serum at room temperature for 1 h, the cells were stained with an anti-p65 Ab (ab7970, 1:100; Abcam) and Alexa 488-conjugated donkey anti-IgG (a21206, 1:1000; Thermo Fisher Scientific). After washing with PBS three times, the nuclei were stained with DAPI (1:500; BD Biosciences, San Jose, CA, USA). The stained cells were visualized with a confocal microscope (Zeiss, LSM800, Gottingen, Germany).
+ Open protocol
+ Expand
3

Quantitative Protein Analysis in Cell Fractions

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were harvested in RIPA lysis buffer (Bioteke Co, Beijing, China) containing 1 mM phenylmethylsulfonyl fluoride and centrifuged at 12,000×g for 15 min at 4°C. Whole cell lysate was used for SMAD7 detection. Cytosolic and nuclear fractions were prepared using standard nuclear and cytoplasmic extraction reagents (Thermo Scientific, Rockford, IL, USA). Protein concentration was measured using the Bio-Rad method. Samples (20 µg protein) were separated by 10% SDS-PAGE and transferred to a nitrocellulose membrane. The membranes were blocked with 5% non-fat milk in TBST buffer (100 mM NaCl, 10 mM Tris-HCl, pH 7.4, 0.1% Tween-20) for 1 h prior to incubation with a primary antibody against SMAD7 (1∶1000; ab90085; Abcam), NF-κB p65 (1∶1000; ab7970; Abcam), GAPDH (1∶2500; ab7970; Abcam) or lamin B1 (1∶1000; #13435; Cell Signaling Technology; Boston, MA, USA) at 4°C overnight, followed by incubation with an appropriate peroxidase-conjugated secondary antibody (1∶1000 dilution). Signal was visualized by chemiluminescence (Odyssey Li-COR) using GAPDH as a control. In the case of nuclear NF-κB p65, lamin B1 was employed as the loading control. Band intensity was assessed using Quantity one 4.6.2 software.
+ Open protocol
+ Expand
4

EMSA Assay for NF-κB Binding

Check if the same lab product or an alternative is used in the 5 most similar protocols
Protein–DNA interaction was detected using an Odyssey Infrared EMSA kit (LI-COR Biosciences), according to the manufacturer's protocols. In brief, nuclear extracts from hepatocytes were assembled with a DyLight 680-labeled double-stranded NF-κB consensus oligonucleotide for EMSA (Takara Co., Dalian, China). The sense sequence was 5′-AGTTGAGGGGACTTTCCCAGGC-3′. The signal was detected and quantified using Odyssey infrared imaging system (LI-COR Biosciences). Hundredfold molar excess of unlabeled probe was used as competitor. Supershift assays were conducted using an anti-NF-κB p65 antibody (ab7970, Abcam). Both assays were conducted to confirm the specificity of NF-κB /DNA-binding activity.
+ Open protocol
+ Expand
5

Immunocytochemical Analysis of NF-κB Translocation

Check if the same lab product or an alternative is used in the 5 most similar protocols
For immunocytochemistry staining, RA-FLSs were seeded at 2 × 103 cells per well on eight-well glass chamber slides (154534, Nunc, Thermo Scientific). One hour after TNFα stimulation (0.1 ng ml−1, 210-TA, R&D Systems), the cells were fixed with chilled fresh methanol and permeabilized with PBS-T containing 0.25% Triton X-100. The slides were then treated with a blocking buffer (1% bovine serum albumin in PBS-T) and incubated overnight with anti-p65 antibody (ab7970, Abcam, Cambridge, UK) at 4 °C. After rinsing with PBS-T, the slides were incubated again with goat anti-rabbit IgG secondary antibody and then with Alexa Fluor 488 conjugate (A-11008, Invitrogen) for 30 min and mounted using mounting medium with DAPI. The mounted slides were examined using a confocal laser scanning microscope (LSM 510 Meta, Zeiss, Oberkochen, Germany).
+ Open protocol
+ Expand
6

Quantitative Analysis of TGF-β1 and NF-κB in Renal Cortex

Check if the same lab product or an alternative is used in the 5 most similar protocols
Proteins for western blot analysis were extracted from the renal cortex by lysing with NETN150 (0.5% NP-40, Tris PH 8.0 50 mM, NaCl 150 mM). The proteins were quantified by Bradford, and the samples were separated by SDS PAGE. Gels were transferred to the nitrocellulose membrane (Axygen, Union City, CA) and then blocked with 5% nonfat milk for 1 hour at room temperature, the membrane was incubated with primary antibodies overnight at 4°C, followed by horseradish peroxidase- (HRP-) linked secondary antibody. The antibodies against TGF-β1 (ab169771) and NF-κBp65 (ab7970) were purchased from Abcam, and phospho-NF-κBp65 (Ser536) was bought from Cell Signaling. After usage of Immobilon Western Chemiluminescent HRP Substrate kit (Millipore Corporation, Billerica, MA), the band was quantified with ImageJ (National Institutes of Health, Bethesda, MD, USA).
+ Open protocol
+ Expand
7

Western Blot Analysis of NFκB p65

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were washed in PBS and lysed in 1× NuPAGE LDS Sample Buffer (Life Technologies). NuPAGE Reducing Agent was added to the samples prior to heating at 95°C. Proteins were separated on a NuPAGE Novex Bis-Tris 4-12% gel in a Bio-Rad system with MOPS SDS Running Buffer (Life Technologies). To transfer proteins from the gel onto an Immun-Blot PVDF Membrane (Bio-Rad), a wet blotting system (Bio-Rad) was used with NuPAGE transfer buffer containing 10% methanol. The membrane was blocked with 5% semiskimmed milk (Sigma), 0.1% Tween 20 (Calbiochem) in PBS (GIBCO). This was followed by incubation with the primary antibody against NFκB p65 (abcam, ab7970) in blocking buffer. After washing the membrane, the antibody swine-anti-rabbit with horseradish peroxidase (HRP) conjugate (Dako) was added. Subsequent to washing the membrane, HRP was visualized by ECL Lumilight Plus (Roche), and the signal was captured with the ImageQuant LAS4000 (GE Healthcare). Quantification of the protein bands in the images was done with ImageJ Fiji.
+ Open protocol
+ Expand
8

Immunohistochemical Protein Localization

Check if the same lab product or an alternative is used in the 5 most similar protocols
IHC was performed (10 (link)) using primary antibodies for PCNA (clone PC-10; Ab-1; Thermo Scientific), KRT14 (NCL-LL002; Novocastra), COX-2 (12282; Cell Signaling), S100A8 (T-1032; BMA), S100A9 (NB110-89726; Novus Biologicals), NF-κB p65 (ab7970; Abcam), STK40 (orb101780; Biorbyt), EGLN3 (orb443107; Biorbyt), and MBOAT2 (orb185503; Biorbyt). Protein was localized by incubation with the 3-amino-9-ethylcarbazole substrate chromogen (Dako) or 3,3′-diaminobenzidine tetrahydrochloride (Sigma-Aldrich).
+ Open protocol
+ Expand
9

Hippocampal Protein Extraction and Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Hippocampal tissue powder was sonicated in 1M Tris (pH 7.5) membrane lysis buffer containing 1M NaCl, 1% Trition X-100, 5mM EDTA, proteinase inhibitor, and phosphatase inhibitor. Supernatant was collected after 10 min centrifugation at 18,000 × g, 4°C. Protein concentration was measured by Bradford assay. Primary antibodies goat anti-Iba1 (sc-28528), rabbit anti-c-Jun (sc-1694) and rabbit anti-IL-1β (sc-7884) were purchased from Santa Cruz (Dallas, TX), rabbit anti-GFAP (ab7260) and rabbit anti-NFκB p65 (ab7970) were purchased from Abcam (Cambridge, MA); Secondary antibodies were purchased from Li-Cor (Lincoln, NE). Other western blot procedures have been reported in details in our previous publication (Pang et al., 2013 (link)).
+ Open protocol
+ Expand
10

Chromatin Immunoprecipitation and Real-time PCR

Check if the same lab product or an alternative is used in the 5 most similar protocols
ChIP was performed as described previously89 (link). Anti-JMJD3 antibody (AP1022a, Abgent), anti-NICD (4147, Cell Signaling), anti-trimethyl H3K27 antibody (07–449, Millipore), anti-monomethyl H3K27 antibody (07–448, Millipore), anti-phosphorylated RNA polymerase II antibody (ab5131, Abcam), anti-p50 antibody (ab7971, Abcam), anti-p65 antibody (ab7970, Abcam), or normal IgG (SC-2027, Santa Cruz Biotechnology) were used. Real-time PCR was performed with a Stratagene Mx3000P using primers (see Supplementary Table S2).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!