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10 protocols using sc 8426

1

Western Blot Analysis of Cell Proteins

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Total protein from cells was extracted in lysis buffer (Pierce) and quantified using the Bradford method. Then, proteins (50 µg) were separated by SDS-PAGE (12%) and transferred to polyvinylidene fluoride (PVDF) membrane (Millipore, Billerica, MA, USA). Subsequently, membranes were incubated overnight at 4°C with monoclonal antibodies against E-cadherin (sc-8426, 1:200; Santa Cruz Biotechnology), β-catenin (610154, 1:500; BD Transduction Laboratories, Lexington, KY, USA) or GAPDH (sc-365062, 1:500, Santa Cruz Biotechnology). After incubation with peroxidase coupled anti-mouse IgG (Santa Cruz Biotechnology) at 37°C for 2 h, bound proteins were visualized using ECL (Pierce) and detected using BioImaging Systems (UVP Inc., Upland, CA, USA). The relative protein levels were calculated based on GAPDH protein as a loading control.
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2

Western Blot Analysis of EMT Markers

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Cells (please see below) were lysed by using lysis buffer for western blotting (P00l3, Beyotime) and loaded onto 10% sodium dodecyl sulphate-polyacrylamide gels and were then transferred onto polyvinylidene difluoride membranes (Millipore). The quantification of total protein was performed using a Pierce BCA Protein Assay kit (Thermo Fisher Scientific), and equal amounts of protein (30 μg) were used for analysis. Blots were blocked with 5% milk/TBST and incubated with primary antibodies (Twist1: 1:500, sc-15393, Santa Cruz Biotechnology; Slug: 1:1,000, 6591, Cell Signaling Technology; Snail: 1:1,000, ab53519, Abcam; Vimentin: 1:1,000, 2707-1, Epitomis; EphA2: 1:500, sc-924, Santa Cruz Biotechnology; VE-cadherin: 1:500, ab33168, Abcam; MMP2: 1:500, ab37150, Abcam; E-cadherin: 1:200, SC-8426, Santa Cruz Biotechnology; p-smad2/3: 1:500, sc-11769, Santa Cruz Biotechnology) at 4°C overnight, followed by incubation with secondary antibodies (goat anti-mouse IgG-HRP and goat anti-rabbit IgG-HRP, 1:2,000; sc-2005 and sc-2030; Santa Cruz Biotechnology) for 2 h at room temperature. Blots were developed using an enhanced chemiluminescence detection kit (Amersham Pharmacia Biotech). For protein loading analyses, p-actin antibody (1:1,000, P30002, Abmart) or GAPDH (1:2,000, ab9485, Abcam) was used.
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3

Fucoidan-Mediated Protein Regulation

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After cells were treated with fucoidan for 48 h, cell lysates were separated by electrophoresis on a sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) gel. After gel transference to polyvinylidene fluoride membranes (Millipore), the membranes were incubated with antibodies against E-cadherin (sc-8426, Santa Cruz, CA, USA), occludin (ab31721, Abcam, Cambridge, MA, USA), N-cadherin (sc-8424, Santa Cruz, CA, USA), vimentin (sc-6260, Santa Cruz, CA, USA), ADAM12 (ab16049, Abcam), TGF-βR2 (sc-220, Santa Cruz, CA, USA), PTEN (sc-7974, Santa Cruz, CA, USA), p-phosphoinositide 3-kinase (PI3K; ab182651, Abcam), t-PI3K (ab86714, Abcam), p-AKT (sc-16646, Santa Cruz, CA, USA), t-AKT (sc-8312, Santa Cruz, CA, USA), and glyceraldehyde-3-phosphate dehydrogenase (sc-25778, Santa Cruz, CA, USA). Subsequently, the membranes were incubated with suitable secondary antibodies. Bands for specific molecules were detected using enhanced chemiluminescence (ECL; Millipore).
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4

Immunofluorescence Analysis of E-cadherin in CRC Tissues

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CRC tissues were fixed in 4% formaldehyde solution for 2 h at 25°C and then sectioned into 5-µM-thick frozen sections. The sections were washed in cold PBS 3 times and subsequently blocked with 2% bovine serum albumin V at 25°C (BSA-V; Beijing Solarbio Science & Technology Co., Ltd., Beijing, China) for 1 h. Samples were incubated with primary antibodies against E-cadherin (1:20; sc-8426; Santa Cruz Biotechnology, Inc., Dallas, TX, USA) diluted with 1% BSA-V overnight at 4°C. Following 3 washes with PBS, the sections were incubated with tetramethylrhodamine conjugated goat anti-rabbit secondary antibody (1:1,000; sc-362281; Santa Cruz Biotechnology, Inc.) diluted with 1% BSA-V in the dark for 1 h at 25°C and washed in PBS again for 3 times. DAPI diluted with PBS was used to stain the nuclei at 25°C. Images at a magnification of ×40 were captured using an inverted fluorescence microscope (Nikon Corp., Tokyo, Japan).
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5

Western Blot Analysis of Cell Signaling Proteins

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Protein extract (50 μg) was separated by 10% SDS-polyacrylamide gel electrophoresis (SDS-PAGE) and was electrophoretically transferred onto a polyvinylidene fluoride membrane (Millipore, Darmstadt, Germany). The membranes were blocked for 30 min at room temperature with 5% non-fat dried milk and incubated for 1 h with monoclonal antibodies against E-cadherin (sc-8426, mouse, IgG1), N-cadherin (sc-7939, rabbit, IgG), γ-catenin (sc-30997, goat, IgG), insulin-like growth factor 1 receptor (IGF-1R; sc-sc462, mouse, IgG1) or β-actin (sc-1616, goat, IgG) (Santa Cruz Biotechnology, Dallas, TX, USA). The antibodies against E-cadherin, N-cadherin and γ-catenin were at a dilution of 1:1,000 and the antibody against β-actin was at a dilution of 1:5,000. Subsequent to washing with PBS-T (10 mm Tris, pH 8.0; 150 mm NaCl; 0.5% Tween 20; Sheng Gong), the membranes were incubated for 1 h with secondary HRP-linked polyclonal goat anti-rabbit antibody (sc-2004, IgG, Santa Cruz Biotechnology), at a 1:20,000 dilution. The membranes were washed again with PBS-T and the proteins were visualized using ECL chemiluminescence and exposed to X-ray film.
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6

Immunofluorescence Analysis of hCECs

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The hCECs were cultured in a slide chamber and treated with ROCK inhibitors and incubated for 24 h. After removing the media, they were washed with phosphate-buffered saline (PBS), and fixed for 20 min in 3.7% (v/v) formaldehyde solution. Cells were permeabilized for 10 min with 0.5% (v/v) Triton X-100 and blocked for 1 h with 1% (w/v) bovine serum albumin (BSA) at room temperature. After washing with PBS, the cells were incubated overnight with either rabbit anti-Ki67 antibody (sc-23900, Santa Cruz, CA, USA), ZO-1 (sc-10804), β-catenin (ab32572), integrin β1 (sc-18887), SOX2 (sc-365823), N-cadherin (sc-59987), or E-cadherin (sc-8426) at 4 °C, and then washed with PBS. Cells are incubated with fluorescein isothiocyanate-conjugated goat anti-rabbit IgG antibody (1:100) or anti-mouse IgG antibody for 1 h at 37 °C in the dark. Cells were counterstained with Hoechst33342 nuclear staining dye. After extensive washing with PBS, the slides were mounted in a drop of mounting medium to reduce photobleaching. Negative control staining was conducted in parallel with the omission of the primary antibodies.
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7

Western Blot Analysis of SMAD3, E-cadherin, and N-cadherin

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Protein was collected and extracted from A549 and H1299 cells with RIPA lysis buffer and protease inhibitor cocktail and protein phosphatase inhibitor. The samples were then transferred to PVDF membranes, following electrophoresis and the membranes were incubated with rabbit-anti SMAD3 (Cell Signaling Technology, Inc.) or mouse-anti E-cadherin or mouse-anti N-cadherin (both Santa Cruz Biotechnology, Inc.) primary antibodies(SC-8426 for E-cadherin, SC-8424 for N-cadherin) overnight at 4 °C. The following day, the membranes were incubated with indicated secondary antibodies (Santa Cruz Biotechnology, Inc, SC-2005) for 1 h at room temperature. Detection was performed using the electrochemiluminescence kit (Pierce; Thermo Fisher Scientific, Inc.). β-actin (Santa Cruz Biotechnology, Inc.) was used as the internal control.
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8

Immunofluorescent Analysis of Epithelial-Mesenchymal Transition

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Cells cultured on glass slides were washed with PBS after discarding the medium, and they were then fixed with cold methanol at -20°C for 15 min. The cells were permeabilized with 0.1% Triton X-100 in PBS for 20 min and blocked with 5% FBS in PBS at room temperature for 30 min. The cells were then incubated with primary antibodies (E-cadherin: 1:100, sc-8426, Santa Cruz Biotechnology; Vimentin: 1:100, 2707-1, Epitomics) for 1 h at 37°C. The cells were then incubated for 1 h with secondary antibodies conjugated to Alexa 488 (A32723, Invitrogen; Thermo Fisher Scientific) or Alexa 568 (A-11011, Invitrogen; Thermo Fisher Scientific), and then they were washed with PBS. Nuclear staining with 4′,6-diamidino-2-phenylindole (DAPI) (Sigma) for 10 min at room temperature was then performed. Slides were viewed under a fluorescence microscope (Nikon).
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9

Protein Expression Analysis Protocol

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Equal amounts of cell lysates were electrophoretically separated and transferred to a PVDF membrane. After blocking with 5% skimmed milk, the membrane was incubated with primary antibodies against SOX9 (AB5535, 1:2000; Millipore), E-cadherin (sc-8426, 1:100; Santa Cruz), vimentin (sc-6260, 1:100; Santa Cruz), β-actin (sc-7963, 1:100; Santa Cruz), and appropriate secondary antibodies. The signals were detected using enhanced chemiluminescence (GE Healthcare).
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10

Immunofluorescence Characterization of mESCs

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The mESCs colonies were fixed with 4% PFA for 20 min at room temperature, washed three times with PBS and permeabilized with 0.1% Triton X-100 at room temperature for 20 min. After three washes with PBS, the cells were blocked with 5% FBS for one hour at room temperature and incubated with diluted primary antibody overnight. The next day, the cells were washed three times with PBS and incubated with fluorophore-conjugated secondary antibody for one hour at room temperature and followed by DAPI staining. The images were taken under the fluorescence microscope (EVOS FL, Thermo Scientific). The following antibodies were employed in this study: anti-SSEA1 (1:100, 4744s, CST), anti-Nanog (1:300, ab80892, Abcam), anti-Oct-3/4 (1:200, sc-5279, Santa Cruz), anti-E-cadherin/CDH1 (1:1000, sc-8426, Santa Cruz), anti-Neuronal Class III β-Tubulin (1:1000, MMS-435P, Covance), anti-DESMIN (1:500, MAB3430, Millipore), anti-AFP (1:50, MAB1368, R&D System).
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