The largest database of trusted experimental protocols

13 protocols using erk1 2

1

Optimization of Inhibitor Screening Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Drug FGF401 was purchased from CASYMCHEM; BLU-554, Geldanamycin, Imatinib, LY-294002, Parthenolide, Tanespimecin, Trichostatin A and Vorinostat were purchased from MedChemExpress. Drug details have shown in Supplementary Table S2. Antibodies FGFR4, p-ERK 1/2 and ERK 1/2 were purchased from Abclonal; Antibodies FGFR4, p-AKT (T308) and AKT were purchased from Cell Signaling Technology; Antibodies FGF19 and KLB were purchased from Abcam. HRP labeled goat anti rabbit IgG (H + L) and HRP labeled goat anti mouse IgG (H + L) were purchased from Beyotime. Antibodies details have shown in Supplementary Table S3.
+ Open protocol
+ Expand
2

Immunodetection of Signaling Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Antibodies against PAK4, GAPDH, p65, and Lamin A, ERK1/2, phosphor-ERK1/2, P38MAPK, phosphor-P38MAPK, JNK1, phosphor-JNK1, c-JUN phosphor-c-JUN, and IκBα were purchased from Abclonal Technology (Wuhan, China). Antibody against phosphor-PAK4 was obtained from Cell Signaling Technology (Beverly, MA). HRP-labeled anti-mouse/rabbit secondary Antibodies (Boster, China) were used in this study. The monoclonal antibody against JEV NS5 was prepared in our laboratory.
+ Open protocol
+ Expand
3

Antibody Profiling of Signaling Pathways

Check if the same lab product or an alternative is used in the 5 most similar protocols
The following antibodies were purchased: CDH11 (Abcam, 4442), vimentin (Abcam, ab8978), collagen-III (Abcam, ab34710), α-SMA (Abcam, ab5694), JNK (Cell Signaling, #9252), pJNK1/2 (Cell Signaling, #9251), ERK1/2 (Abclonal, A10613), pERK1/2 (Abclonal, AP0472), P38 (Abclonal, A11340), pP38 (Abclonal, AP0297), Smad2/3 (Cell Signaling), p-Smad2 (Abcam), p-Smad3 (Abcam), Smad4 (Cell Signaling), TGF-β1 (Abclonal), TGF-βR1 (Abclonal), GAPDH (Beyotime, AG019) and goat anti-rabbit IgG H&L (Beyotime, A0423). Angiotensin-II (A9525) was purchased from Sigma-Aldrich and hIgG1 (110-HG) and hCDH11-Fc (1790-CA) were from R&D Systems. LY3200882 (TGF-β-Smad pathway inhibitor), U0126 (ERK1/2 inhibitor), SP600125 (JNK inhibitor) and SB203580 (P38-MAPK inhibitor) were purchased from Selleck Chemicals (USA).
+ Open protocol
+ Expand
4

Western Blot Analysis of Osteogenic Markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
We first lysed cells in 2% sodium dodecyl sulfate with 2 M urea, 10% glycerol, 10 mM Tris-HCl (pH 6.8), 10 mM dithiothreitol and 1 mM phenylmethylsulfonyl fluoride. We then centrifuged the lysates and separated the supernatants by SDS-PAGE and blotted them onto a nitrocellulose (NC) membrane (Bio-Rad Laboratories). We next incubated the membrane with specific antibodies to Runx2 (Cell Signaling Technology, #12556S, 1:1000), Osteocalcin (Abcam, #ab76690, 1:1000), NFATc1 (Cell Signaling Technology, # 8032S, 1:1000), c-FOS (Cell Signaling Technology, #2250, 1:2000), CTSK (Abcam, # ab19027, 1:2000), phospho-Akt (Ser473) (Cell Signaling Technology, #4060, 1:1000), phospho-Src (Tyr416) (Cell Signaling Technology, #2101, 1:1000), phospho-ERK1/2 (Thr202/Tyr204) (Cell Signaling Technology, #4370, 1:1000), ERK1/2 (Abclonal Technology, #A0229, 1:1000). The membrane was then visualized by enhanced chemiluminescence (ECL Kit, Amersham Biosciences).
+ Open protocol
+ Expand
5

Western Blot Analysis of Protein Markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
Proteins were extracted from cells and tissues using RIPA buffer, and the concentration of total protein was determined using a BCA Assay Kit (Yeasen Biotech). The protein samples underwent separation using SDS-PAGE and were subsequently transferred to PVDF membranes, followed by blocking in 5% non-fat milk for 2 h. Next, the membranes were incubated with specific primary antibodies overnight at 4°C, followed by secondary antibodies for 1 h. The detection of the band signals was accomplished using an electrochemiluminescence (ECL) system. The following primary antibodies were used in this study TSG101 (Affinity), CD63 (Affinity), N-cadherin (Affinity), E-cadherin (Affinity), vimentin (Affinity), GAPDH (ABclonal), RAS (ABclonal), p-RAF1 (ABclonal), RAF1 (ABclonal), p-MEK1/2 (ABclonal), MEK1/2 (ABclonal), p-ERK1/2 (ABclonal), ERK1/2 (ABclonal), and TPR (Abcam).
+ Open protocol
+ Expand
6

Comprehensive Antibody Validation Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Anti-RxRxxS*/T*(#10001S), RSK1 (#9333S), RSK2 (#5528S), p-eIF4B (#3591S), eIF4B (#3592S) antibodies were ordered from Cell Signaling Technology. HRP anti-HA (#901519), HRP anti-Flag (#637311) antibodies were purchased from BioLegend. pRSK1 (Thr359/Ser363) (#AP0539), pRSK1 (Ser380) (#AP1147), RSK3 (#A16305), ERK1/2 (#A10613), and SUMO1 (#A19121) were purchased from ABclonal. Anti-RTA (ORF50) monoclonal mouse antibody was given by Dr. Ke Lan (Wuhan University, China) [34 (link)]. Anti-ORF65 monoclonal mouse antibody was given by Dr. Shou-Jiang Gao (University of Pittsburgh, USA) [35 (link)]. Monoclonal antibodies against ORF45 and ORF52 and polyclonal antibodies against K3, K8, and ORF55 were described previously [36 (link)–38 (link)]. EZview Red ANTI-FLAG M2 Affinity Gel (#F2426) and sodium butyrate (#B5887) were ordered from Sigma, Doxycycline (#S4163) was ordered from Selleck, Glutathione Sepharose 4B (#17-0756-01) were ordered from GE Healthcare. ClonExpress II One Step Cloning Kit (#C122-01) and HiScript II Q RT SuperMix for qPCR (+gDNA wiper) (#R223-01) were purchased from Vazyme Biotech. Lipofectamine 3000 (#3000015) were purchased from Thermo Fisher Scientific.
+ Open protocol
+ Expand
7

Protein Expression and Signaling Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Protein from cells or tissues was extracted by the RIPA buffer (Millipore, 20188) and subjected to regular western procedure. The primary antibodies used in the experiments were antibodies to UCP1 (Abcam, ab10983), β-Actin (Abclonal, AC004), HSP90 (Cell Signaling Technology, 4874S), DUSP22 (Abcam, ab70124), p-STAT3 (Tyr 705) (Santa Cruz , sc8059), STAT3 (Cell Signaling Technology, 9139S), p-p38 (ABclonal, AP0526), p38 (ABclonal, A10382), p-ERK1/2 (Cell Signaling Technology, 9106S), ERK1/2 (ABclonal, A11116), p-ATF2 (Cell Signaling Technology, 9221), ATF2 (ABclonal, A2155), p-CREB1-S133 (ABclonal, AP0019),CREB1 (ABclonal, A1189), phosphor-PKA substrate (RRXS*/T*) (Cell Signaling Technology, 2912) and OXPHOS cocktail (Abcam, ab110413).
+ Open protocol
+ Expand
8

Biochemical Reagents for Cell Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
In our study, 2,2-Azino-bis-3-ethylbenzothiazoline-6-sulfonic acid (ABTS solution), 2,2-diphenyl-1-picrylhydrazyl (DPPH), N,N,N′,N′-tetramethylethylenediamine (TEMED), acrylamide/bisacrylamide, ammonium persulfate (APS), ascorbic acid (vitamin C), bovine serum albumin (BSA), ethanol (96%), glycine, methanol, Ponceau S, resazurin sodium salt (RES), sodium dodecyl sulfate (SDS), Trolox, trypsin-EDTA solution, Tris-HCl, Tris-Base, and Tween-20 were purchased from Merck KGaA (Darmstadt, Germany). The PVDF membrane with 0.45 µm-pore size and primary antibodies against SOD1 were obtained from Santa Cruz Biotechnology (Santa Cruz, CA, USA). The primary antibodies against GAPDH, NF-κB, IκBα, SRC, GLUT4, PCNA, PGC-1α, PPARγ, p-ERK1/2, and ERK1/2 were purchased from ABClonal (Woburn, MA, USA). The primary antibodies against NLRP3, anti-mouse- and anti-rabbit-HRP-conjugated antibodies were purchased from ThermoFisher (Waltham, MA, USA). Potassium persulfate (Warchem, Zakręt, Poland), antibiotics (Penicillin-Streptomycin, Life Technologies, Bleiswijk, The Netherlands), DMEM (Dulbecco’s Modification of Eagle’s Medium, Biological Industries, Beit Haemek, Israel), FBS (Fetal Bovine Serum, Biological Industries, Genos, Lodz, Poland), and phosphate buffered saline (PBS, pH 7.00 ± 0.05, ChemPur, Piekary Ślaskie, Poland) were also used during the analyses.
+ Open protocol
+ Expand
9

Protein Expression Analysis Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Strong RIPA lysis buffer (GenStar, Nanjing, China) was used to lyse cells, bicinchoninic acid (BCA) was used to quantify proteins (GenStar, Nanjing, China). Then, 10% SDS-PAGE and PVDF membrane (Millipore, Burlington, MA, USA) were performed to separate and transfer protein. Primary antibodies, including DAXX (Abways, Beijing, China), ERK1/2 (ABclonal, Wuhan, China), p-ERK (Cell Signaling Technology, Connors Farm, MA, USA), mTor (Cell Signaling Technology, USA), and actin (Cell Signaling Technology, USA) were incubated with membrane at 4 °C for more than 8 h. Then, secondary antibody (1:500) was incubated with membrane for 1 h at room temperature. Finally, the blots were visualized by Chemiluminescent HRP Substrate (Millipore, Burlington, MA, USA). ImageJ was used to analyze the results.
+ Open protocol
+ Expand
10

Regulation of Inflammatory Pathways in RAW264.7 Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
RAW264.7 cells (1 × 106/well) were cultured in a 6-cell plate overnight and then pretreated with E9OAEE (6.25, 12.5, 25, 50 µg/mL) for 2 h and stimulated with LPS (1 µg/mL) for 24 h or indicated time, respectively. Cells were harvested and lysed in radioimmunoprecipitation assay (RIPA) lysis buffer (Solarbio, Beijing, China) on ice for 30 min, and the supernatant was collected. Proteins were quantified using Enhanced BCA Protein Assay Kit (Beyotime, Jiangsu, China), and equal amounts of protein (40 µg) were separated via 10% sodium dodecyl sulfate (SDS)-polyacrylamide gel and then transferred onto PVDF membranes (Millipore, CA, USA). The membranes were blocked with 5% skim milk at room temperature for 1 h and then incubated overnight at 4°C with primary antibodies specific for iNOS (ABclonal, Wuhan, China), GAPDH (Bioworld Technology, Inc, MN, USA), COX2 (Bioworld Technology, Inc, MN, USA), JNK1/2/3 (ABclonal, Wuhan, China), p-JNK (Bioworld Technology, Inc, MN, USA), P38 (ABclonal, Wuhan, China), p-P38 (Bioworld Technology, Inc, MN, USA), ERK1/2 (ABclonal, Wuhan, China), and p-ERK1/2 (ABclonal, Wuhan, China). The membrane was then incubated for an additional 60 min with a goat anti-rabbit lgG/HRP (Bioss, Beiing, China). Then, the membrane was developed using Super ECL Plus kit (US Everbright Inc, Suzhou, China) for imaging with ChemiScope 3000 mini (Clinx, Shanghai, China).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!