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Mestrenova v 8

Manufactured by Mestrelab Research
Sourced in Spain

MestReNova v.8.0 is a software application for the processing and analysis of nuclear magnetic resonance (NMR) spectra. It provides tools for baseline correction, peak picking, signal assignment, and data visualization.

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5 protocols using mestrenova v 8

1

Characterization of β-carotene from S. obliquus

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The chemical structure of β-carotene isolated from S. obliquus was confirmed by using 1H-NMR analysis on an NMR spectrometer (500 MHz, JEOL, USA) using CDCl3 (Merck, Germany) as the solvent. The chemical shifts are reported in ppm (parts per million; δ) and coupling constants (J) are expressed in Hz. TMS was used as an internal standard. For improving the signal-to-noise ratio. The data were analyzed using the software program MestReNova v8.0.2 (2012 Mestrelab Research S. L.).
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2

Characterization of Compound P1 from S. obliquus

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The 1H- and 13C-NMR (500 MHz, 125 MHz) spectra of P1 (isolated from S. obliquus) were recorded on an NMR spectrometer (JEOL, USA) with CDCl3 as the solvent. The chemical shifts are reported in ppm (parts per million; δ) and coupling constants (J) are expressed in Hz. TMS was used as an internal standard. For improving the signal-to-noise ratio, total scans of 128 and 725 were performed for 1H- and 13C-NMR, respectively. The data were analyzed using the software program MestReNova v8.0.2 (2012 Mestrelab Research S. L.).
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3

NMR Characterization of Hydroxyprotoilludene

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All NMR spectra were recorded on a DRX 500-MHz NMR spectrometer (Bruker, Billerica, MA, USA) using a 5-mm BBO probe with a z-gradient. Hydroxyprotoilludene samples were dissolved in deuterated dichloromethane to a final concentration of ~ 50 mM and were calibrated against the solvent signals at 5.32 and 54.00 ppm. 13C-NMR spectra was acquired by conducting 1000 scans with a 30° pulse and a delay of 2 s. 13C-DEPT-135 spectra was also acquired by conducting 400 scans. All 2D spectra were acquired using Bruker standard pulse programs. The DQF-COSY and gs-NOESY spectra were measured in 512 increments, with two or four scans per increment, respectively. A mixing time of 600 ms was used for the acquisition of the NOESY spectrum. For heteronuclear correlation, the gs-HSQC and gs-HMBC spectra were measured in 512 increments, with four or eight scans per increment, respectively. The spectra were optimized for 1J and nJ couplings of 140 and 8 Hz, respectively. The data were processed using TopSpin v1.3 (Bruker) and MestReNova v8.0 (MestreLab Research, Santiago de Compostela, Spain).
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4

Metabolite Quantification via HR-MAS NMR

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All the HR-MAS NMR spectra were referenced, baseline-, phase-corrected and analyzed by using MestReNova v.8.0 (Mestrelab research S.L., Spain). Quantification of metabolites was performed using Chenomx NMR Suite 8.3 (Chenomx Inc., Edmonton, Alberta, Canada), which allowed for qualitative and quantitative analysis of an NMR spectrum by fitting spectral signatures from the Human Metabolome Database (HMDB) to the spectrum. Metabolite concentrations were subsequently calculated as ratio to total creatine (tCr). Since external references might give misleading results, Cr resonance is a reliable internal reference widely used in animal studies.
Statistical analysis was performed using OriginPro v. 8 (Northampton, USA). Differences in individual metabolites were evaluated using one-way analysis of variance (ANOVA) with a Tukey post-hoc correction for multiple comparisons. A p value of < 0.05 was considered significant. Levene’s test was performed for homogeneity of variance analysis, which indicated that the population variations are not significantly different.
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5

NMR Metabolite Quantification in Animal Studies

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All of the spectra were referenced, baseline-, phase-corrected and analysed by using MestReNova v.8.0 (Mestrelab research S.L., Spain). Quantification of metabolites was performed using Chenomx NMR Suite 8.3 which allowed for qualitative and quantitative analysis of an NMR spectrum by fitting spectral signatures from an HMDB database to the spectrum. Metabolite concentrations were subsequently calculated as ratio to tCr. Since external reference might lead to the misleading results, Cr resonance is a reliable internal reference widely used in animal studies. One-way analysis of variance (ANOVA) of the NMR quantification results were performed with OriginPro v. 8 (Northampton, USA). F-values were calculated, and F-values larger than 2.8 (p < 0.05) were considered significant.
Quantification of Glc and EA was done from 2D spectra as described in supplementary information.
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