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13 protocols using nu serum 4

1

Prostate Cancer Cell Line Culture

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The prostate cancer-derived cell lines PC-3, DU145 (human), and TRAMP-C2 (Murine) and the human prostatic stromal myofibroblast cell line were obtained from American Type Culture Collection (ATCC). All cell lines were authenticated by DDC Medical with short tandem repeat profiling (STR) in 2014 and stocks frozen. Cell lines were checked monthly using MycoAlert PLUS Mycoplasma Detection Kit (Lonza, Switzerland). The PC-3, DU 145, and WPMY-1 cell lines were routinely grown in F-12K, Eagle’s minimal essential medium (EMEM), and DMEM, respectively, all supplemented with 10% fetal bovine serum (FBS), penicillin/streptomycin, and glutamine. The TRAMP-C2 cell line was maintained in DMEM supplemented with 5% heat-inactivated FBS, 5% Nu-Serum IV (Corning), 10 mg/L bovine insulin (Sigma-Aldrich, UK), and 0.01 mM dihydrotestosterone (DHT) (Fisher, UK).
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2

Stem Cell Differentiation Protocol

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Laminin (23017-95), CyQUANT NF (C35006), bovine pituitary extract (13038-14), HBSS, RPMI, DMEM, DMEM:F12, penicillin-streptomycin, pyruvate solution, fetal bovine serum (FBS), BODIPY 493/503 (D3922), B-27™ Supplement (50X), serum free (17504044) were from Life Technologies; Recombinant Human FGF-basic (100-18B) from Peprotech; doxycycline hyclate (D9891), nicotinamide (N3376), dexamethasone (D4902), 2-deoxyglucose (D6134), Sodium oxamate (O2751), collagenase (C7657), glucose (G7528), tamoxifen (T5648), Sodium oleate (O7501), Bovine Serum Albumin (A7030), Alcian Blue (B8438), Roche cOmplete, Mini, EDTA-free Protease Inhibitor Cocktail (11836170001), ROCK inhibitor: Y-27632 (SCM075) were from Sigma;, Forskolin (1099), IBMX (2845), KT5720 (1288), WWL113 (5259) were from Tocris; mouse EGF (354001), NuSerum IV (355104), ITS+ Premix (354352) and Matrigel (354234) were from Corning; dispase (165–859; Roche); Sp-8-Br-cAMPS (B002 ) and 8-pCPT-2′-O-Me-cAMP (C041) were from Biology Life Science Institute; Oleic acid-[1-14C] was from Perkin-Elmer (NEC315070UC); 4-Bromocrotonic Acid (BrCA) (B2298) was from TCI America; iTaq universal SyBR Green Supermix (BIO-RAD), Protein Block (X0909; DAKO); MACH2 HRP-Polymer (HRP520H) and Betazoid DAB Chromogen Kit (BDB2004H) from Biocare Medical; HG-9-91-01 and KIN112 were kindly provided by Dr. Nathanael Gray.
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3

Isolation and culture of 3D pancreatic spheroids

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We isolated single cells from adult mouse pancreas or human pancreatic cancer tissue and cultured 3D spheroid cysts based on the protocol previously reported (Reichert et al., 2013 (link)). After the tissue was harvested, it was chopped into small pieces and digested in 1 mg/ml collagenase-V (Sigma-Aldrich) at 37 C° for 20 min. Following multiple washes with Hank’s balanced salt solution (HBSS, Gibco) supplemented with 5% fetal bovine serum (FBS), collagenase-digested pancreatic tissue was spun down. The pellet was then diluted in trypsin-EDTA (0.05%) (Gibco) and incubated at room temperature for 5 min. After multiple washes, cells were filtered through a 40 μm cell strainer. Cells were resuspended in Matrigel (Corning) with or without Adeno-Cre virus (provided from the University of Iowa), and 6.5 × 103 cells/well were seeded into a pre-warmed 24 well plate. Cells were cultured in DMEM (Gibco) containing B27 and N2 supplements (Gibco), 5% Nu-Serum IV (Corning), 100 μg/ml trypsin inhibitor, and 100ng/ml Cholera Toxin (Sigma-Aldrich). Medium was replaced every other day. Sphere number and diameter was measured on day 5-7 using ImageJ software.
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4

Culturing Diverse Cancer Cell Lines

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Dissociated human and mouse tumour cells and 4T1 cells were cultured in RPMI 1640 supplemented with GlutaMAX (Gibco, 61870010), 10% foetal bovine serum (FBS, Eurobio Scientific, CVFSVF00–01). HT-1080 cells were cultured in Dulbecco’s Modified Eagle Medium GlutaMAX (DMEM, Gibco, 61965059) supplemented with 10% FBS (Gibco, 10270–106) and penicillin/streptomycin (BioWhittaker/Lonza, DE17–602E). FC1242 and FC1245 murine pancreatic cancer cells, 4a cells and human pancreatic hMIA-2D cells were a generous gift from the Tuveson laboratory (CSHL) and were cultured in DMEM supplemented with 10% FBS and penicillin/streptomycin. Primary human pancreatic PDAC090T, PDAC053T, PDAC211T and PDAC030T cells were grown in serum-free ductal medium: DMEM/F12 supplemented with 0.61g/500μL nicotinamide (Sigma-Aldrich, 3376), 2.50g/ 500μL glucose (Sigma-Aldrich, G6152), 1:200 ITS+ (Corning, 354352), 1:20 Nu-serum IV (Corning, 355104), 100 ng/μL. cholera toxin, 1 μM dexamethasone (Sigma-Aldrich, D4902), 50 nM 3,3’,5-triiodo-L-thyronine (Sigma-Aldrich, T6397) and penicillin/streptomycin.
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5

Cell Culture Conditions for Prostate Cancer and Kidney Cell Lines

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The DU145 (human prostate adenocarcinoma, radio-resistant, p53 deficient, derived from a brain metastasis), TRAMP-C2 (prostate adenocarcinoma, radio-resistant, wild-type p53, derived from 32-week old TRAMP mice) and human kidney embryonic HEK-293 cell lines were obtained from the American Type Culture Collection (ATCC, Rockville, MD). DU145 cells were grown in RPMI-1640 (Hyclone, Waltham, MA) supplemented with 10% fetal bovine serum (FBS) (Hyclone), and 100-units/ml penicillin supplemented with 1 mg/ml streptomycin (Hyclone). TRAMP-C2 cells were grown in Dulbecco’s modified Eagle’s medium (Hyclone) supplemented with 5% FBS (Hyclone), 5% Nu-Serum IV (Corning, Corning, NY), 5 μg/ml bovine insulin (Sigma Aldrich, St. Louis, MO), 10 nM dehydroisoandrosterone 90% (Sigma Aldrich), and 100 units/ml penicillin supplemented with 1 mg/ml streptomycin (Hyclone). The HEK-293 cells were grown in Dulbecco’s modified Eagle’s medium (Hyclone) supplemented with 10% FBS (Hyclone). All cells were grown at 37 °C, in a 5% CO2 in 95% atmosphere incubator.
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6

Pancreatic Organoid Isolation and Drug Screening

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3D spheroid were isolated from mouse pancreas and cultured as previously described (37 (link)). Tissue was digested as described in flow cytometry section with a shorter incubation (20 minutes). Cells were resuspended in Matrigel (Corning) with or without Adeno-Cre virus (provided from the University of Iowa), and 6.5 × 103 cells/well were seeded into a pre-warmed 24 well plate. Cells were cultured in RPMI-1640 containing B27 and N2 supplements (Gibco), 5% Nu-Serum IV (Corning), 100 μg/ml trypsin inhibitor, and 100 ng/ml Cholera Toxin (Sigma-Aldrich). Pilocarpine, scopolamine, McN-34A or pirenzepine (all Sigma-Aldrich) was added to the media, and the medium was replaced every day. Sphere size and number were analyzed using ImageJ software at day 5.
Human patient derived organoids (PDO) were isolated as previously described (37 (link)). Cultured PDOs were mechanically broken and furthermore enzymatically dissociated into single cells. Cell pellets were counted and 1000 cells in a mixture of Matrigel and medium were seeded in each well. After 24 hours, 10 μl of human organoid medium containing the drug was added in each well. After 72 hours the viability was measured with the CellTiter-Glo 3D Cell Viability Assay (Promega).
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7

Culturing Transformed Brain Endothelial Cells

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The simian virus 40 large T antigen-transformed human brain microvascular endothelial cells (HBMEC) were cultured as previously described56 (link)–58 . Briefly, HBMECs were cultured in RPMI-1640 medium (Gibco Life Technologies, Karlsruhe, Germany) supplemented with 10% fetal calf serum (FCS, Gibco Life Technologies), 10% Nu serum® IV (Corning, NY, USA 10%; Becton Dickinson), 1% sodium pyruvate (1 mM), 1% L-glutamine (2 mM), 1% non-essential amino acids (all purchased from GE Healthcare, Little Chalfont, UK), 5 U ml−1 heparin (Biochrom, Berline, Germany) and 30 µg mL−1 endothelial cell growth supplement (ECGS, CellSystems, Troisdorf, Germany). Cultures were incubated in a humid atmosphere at 37 °C with 5% CO2. Cells between the 10th and 25th passages were used for apoptosis analysis. HBMEC were cultured in T25 flasks (Corning Costar Corporation, Cambridge, MA, USA). The embryonic kidney cell line HEK293T and the hepatocellular carcinoma cell line HepG2 were purchased from the American Type Culture Collection, ATCC® CRL-3216 and ATCC® HB-8065, respectively. HEK293T and HepG2 were routinely cultured in Dulbecco’s modified Eagle’s medium (DMEM) + GlutaMAX-I (Gibco Life Technologies, Karlsruhe, Germany) supplemented with 10% FCS.
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8

Silencing Runx1 and Runx2 in TRAMP-C2 cells

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TRAMP-C2 cells, an epithelial line isolated from tumor burdened TRAMP prostates, were maintained in High-Glucose DMEM (Hyclone) supplemented with 0.005 mg/ml bovine insulin (Sigma), 10nM dehydroisoandrosterone (Sigma), 5% fetal bovine serum (Atlanta), 5% Nu-Serum IV (Corning), and 1% penicillin/streptomycin (Life Technologies). One day prior to transfection, cells were plated at 4 x 105 cells/well in 6-wells plates. 50nM Dharmacon ON-TARGETplus SMARTpools for non-targeting control #1 (D-001810-01-05), siRunx1 (L-048982-00), or siRunx2 (L-012665-00-0005) were transfected into cells with Lipofectamine 2000 (Life Technologies) as per manufacturers recommended protocol.
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9

Culturing 4T1 and TPSA23 Cell Lines

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4T1 cells were cultured in DMEM high glucose (HyClone, GE Healthcare, South Logan, UT) with 10% of fetal bovine serum (FBS; Peak Serum, Wellington, CO) and 1% antibiotic/antimycotic (HyClone, GE Healthcare, South Logan, UT). A TPSA23 cell line was previously constructed from the murine prostate adenocarcinoma cell line to secrete human PSA, as described16 (link). TPSA23 cells were cultured in DMEM high glucose, 5% FBS, 5% Nu-Serum IV (Corning, Corning, NY), 10 nM dehydroisoandrosterone (Sigma-Aldrich, St. Louis, MO), 5ug/ml bovine insulin (Sigma- Aldrich, St. Louis, MO), 1% antibiotic/antimycotic.
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10

Stem Cell Differentiation Protocol

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Laminin (23017-95), CyQUANT NF (C35006), bovine pituitary extract (13038-14), HBSS, RPMI, DMEM, DMEM:F12, penicillin-streptomycin, pyruvate solution, fetal bovine serum (FBS), BODIPY 493/503 (D3922), B-27™ Supplement (50X), serum free (17504044) were from Life Technologies; Recombinant Human FGF-basic (100-18B) from Peprotech; doxycycline hyclate (D9891), nicotinamide (N3376), dexamethasone (D4902), 2-deoxyglucose (D6134), Sodium oxamate (O2751), collagenase (C7657), glucose (G7528), tamoxifen (T5648), Sodium oleate (O7501), Bovine Serum Albumin (A7030), Alcian Blue (B8438), Roche cOmplete, Mini, EDTA-free Protease Inhibitor Cocktail (11836170001), ROCK inhibitor: Y-27632 (SCM075) were from Sigma;, Forskolin (1099), IBMX (2845), KT5720 (1288), WWL113 (5259) were from Tocris; mouse EGF (354001), NuSerum IV (355104), ITS+ Premix (354352) and Matrigel (354234) were from Corning; dispase (165–859; Roche); Sp-8-Br-cAMPS (B002 ) and 8-pCPT-2′-O-Me-cAMP (C041) were from Biology Life Science Institute; Oleic acid-[1-14C] was from Perkin-Elmer (NEC315070UC); 4-Bromocrotonic Acid (BrCA) (B2298) was from TCI America; iTaq universal SyBR Green Supermix (BIO-RAD), Protein Block (X0909; DAKO); MACH2 HRP-Polymer (HRP520H) and Betazoid DAB Chromogen Kit (BDB2004H) from Biocare Medical; HG-9-91-01 and KIN112 were kindly provided by Dr. Nathanael Gray.
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