The largest database of trusted experimental protocols

3 protocols using sc 398182

1

Comprehensive Immunohistochemical Analysis of Tumor Microenvironment

Check if the same lab product or an alternative is used in the 5 most similar protocols
The deparaffinized tissue sections at 4 μm thick were heated for antigen retrieval at 95 °C in citric acid buffer (pH 6.0). After treating with 3% H2O2, the sections were blocked with 5% goat normal serum, and incubated with primary antibody against α-SMA (1:100, ab5694, Abcam), CD31 (1:50, ab9498, Abcam, UK) and YAP1 (1:200, sc-398182, Santa Cruz, USA), separately. Microvessel density (MVD) was assessed by CD31 staining as described previously 33 (link), 34 (link). α-SMA+ CAFs and CD31+ endothelial cells were scored by mean optical density (density/area) using Image-pro plus 6.0 software. YAP1 staining in stromal tissues was scored into 5 intensities: 0, no staining; 1+, 1%-25%; 2+, 26%-50%; 3+, 51%-75%; 4+, 76%-100%. For immunofluorescence, cells were grown on pre-prepared coverslips for 24 h. After being fixed with 4% paraformaldehyde, treated by 0.1% triton-100, and incubated with 5% goat serum, the cells were separately stained with antibody specifically against FN (1:150, ab32419, Abcam), α-SMA (1:150), FAP (1:150, ab53066, Abcam), cytokeratin (CK8+CK18) (1:200, ab53280, Abcam), and CD31 (1:80) at 4 °C for overnight, then labelled with FITC-labeled secondary antibody (ZSBIO, China). The nuclei were stained with DAPI and the images were captured by a Nikon Eclipse 80i microscope.
+ Open protocol
+ Expand
2

Pathway analysis of fibroblast activation

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cell lysates were separated by 10% SDS-PAGE. The specific primary antibodies used in Western blotting analysis are as follows: FAP (1:1000, ab53066, Abcam, UK), α-SMA (1:1000, ab5694, Abcam), IL11 (1:1000, ab89887, Abcam), IL15 (1:800, ab7213, Abcam); VEGFA (1:1000, wl00009b, Wanleibio, China); p-VEGFR2 (1:800, D155165, Sangon, China), T-VEGFR2 (1:1000, D151118, Sangon), p-KIT (1:800, D151515, Sangon), p-PDGFRβ (1:800, D151409, Sangon); FXR1 (1:1000, BS70701, bioworld, China); YAP1 (1:1000, sc-398182, Santa Cruz, USA); T-STAT3 (1:1000, #4904, CST, USA), p-STAT3 (1:1000, #9131, CST), T-AKT (1:1000, #9272, CST), p-AKT (1:1000, #2965, CST), T-ERK (1:1000, #9102, CST), p-ERK (1:1000, #4348, CST), T-P38 (1:1000, #9212, CST), p-P38 (1:1000, #4631, CST) and β-Actin (1:1500, ZSBIO, China). For ELISA assay, conditioned medium was collected from 1 × 106 NFs or CAFs in a 6-well plate, and the concentrations of IL11 and IL15 were measured using a standard ELISA Kit (Raybiotech, USA) according to the manufacturer's instructions.
+ Open protocol
+ Expand
3

Protein Expression Analysis of Cell Signaling

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were lysed in cell lytic M buffer (Sigma, St. Louis, USA) supplemented with 0.1% phosphatase-inhibitor (Sigma, St. Louis, MO, USA) and 0.1% protease-inhibitor (Sigma, St. Louis, MO, USA). Isolated proteins (40 μg) were fractioned using 12% SDS gels and electro-transferred to a polyvinylidene difluoride membrane (Merck Millipore, Cork, Ireland). Primary antibodies against S100A4 1:250 (HPA007973; Sigma, St. Louis, USA), CYR61 1:250 (HPA029853; Sigma, St. Louis, MO, USA), YAP 1:250 (sc-398182; Santa Cruz Biotechnology, Dallas, TX, USA), ERK1/2 1:1000 (4695S;Cell Signaling Technologies Inc., Danvers, MA, USA), Phospho-ERK1/2(Thr202/Tyr204) 1:1000 (9101S; Cell Signaling Technologies Inc.), and GAPDH 1:2000 (5174; Cell Signaling Technologies Inc) were used. The membrane was washed and incubated in horseradish peroxidase-conjugated secondary antibodies (GE Healthcare, Buckinghamshire, UK). Antibody-bond protein bands were assayed using a chemiluminescent luminol enhancer solution (Cyanagen, Bologna, Italy).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!