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5 protocols using ab6326

1

BrdU-based Cell Proliferation Assay

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BrdU incorporation was used to reflect cell proliferation. Following transfection, cells were cultivated in a 96-well plate with 5,000 cells per well and cultured at 37°C in 5% carbon dioxide (CO2). Cells were cultured for 48 h followed by incubation with 10 μM BrdU BD Pharmingen (San Diego, CA, USA) for 3 h. Following cell fixation, cells were incubated with peroxidase-coupled anti-BrdU antibody [ab6326; 1:200; Sigma-Aldrich (St. Louis, MO, USA)] at room temperature for 1 h. After that, cells were further incubated with 5 μM peroxidase substrate (tetramethylbenzidine) for another 30 min. Finally, optical density (OD) values at 450 nM were determined to reflect cell proliferation after the deduction of background values, which were the OD values of wells without BrdU treatment but with BrdU antibody incubation.
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2

Immunohistochemical Analysis of Cerebellar Development

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IHC was carried out as previously described (Weisner et al., 2019 (link)). Briefly, cerebellar slides were blocked with Antibody Diluent Reagent Solution (Life Technologies), washed with Phosphate-buffered saline (PBS), stained with primary antibodies at an optimal ratio (listed below) and incubated overnight at 4°C. Slides were then washed and incubated with secondary antibody (1:200) for 1 hour at room temperature. Finally, slides were washed again, stained with the nuclear marker, Hoechst 33342 (1:10,000), mounted, and scanned under a Zeiss LSM 710 Confocal Microscope or Leica TCS SP8 Confocal Microscope. For bromodeoxyuridine (BrdU) injection experiments, P14 pups were injected with 0.05 mg/g BrdU 24 hours, 8 hours and 4 hours prior to tissue harvesting. The BrdU-injected paraffin embedded cerebellar slides were incubated with 1M HCL for 1 hour at 37°C followed by de-waxing steps and neutralized with 0.1M sodium borate buffer pH8.5 for 10 minutes at room temperature. Antibody staining was then carried out as described above. Primary antibodies: GFAP (Invitrogen 180063, 1:400), BrdU (Abcam ab6326, 1:400), Calbindin (CalB; Sigma C9848, 1:400), beta-III Tubulin (Tuj1; Neuromics CH23005, 1:200), Phospho-H3 (Millipore 06–570, 1:500); secondary antibodies: Thermo-Fisher Scientific, Alexa Fluor 488, Alexa Fluor 594.
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3

Visualizing CTC1-STN1-TEN1 Complex

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Following co-transfection of Flag-CTC1, Myc-STN1, and HA-TEN1 into HeLa cells, the cells were grown for 48 h on chamber slides containing media to which BrdU (20 μM) had been added. Cells were then treated with hydroxyurea (2 mM) for 6 h, fixed with 4% paraformaldehyde for 15 min, and permeabilized with 0.15% Triton X-100 for a further 15 min. After washing three times with PBS, the fixed cells were blocked with 5% BSA at 37 °C for 1 h in a humidified chamber, and then co-incubated overnight at 4 °C with anti-BrdU (Abcam, ab6326, 1:5000), anti-Flag M2 (Sigma-Aldrich, F1804, 1:500), and anti-RPA32 pS33 (Bethyl, A300-246A, 1:5000) antibodies. After washing three times with PBS, the samples were incubated with secondary antibodies (LifeTechnologies Alexa 488 anti-rat IgG, A11006, 1:500; ThermoFisher DyLight 550 anti-mouse IgG, 84540, 1:1000; DyLight 649-anti-rabbit IgG, 35565, 1:1000) at room temperature for 1 h. Slides were then washed three times with PBS and dried via a cold ethanol series, before mounting with DAPI-containing mounting medium (Vector Laboratories). Z-stack images were acquired at a thickness of 0.3-μm per slice under a Zeiss AxioImager M2 epifluorescence microscope with a 100x objective and AxioVision software. Single representative Z-slice images were selected.
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4

Cell Cycle Analysis by Flow Cytometry

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Cells were harvested and fixed in 70% ethanol for at least 2 h at −20°C before immunostaining and flow cytometry analysis. Combined analysis of DNA content (1% propidium Iodide, PI, Sigma-Aldrich) and Phospho-H3 (anti-P-H3 S10, Millipore, #06–570; 1/400) or DNA content, BrdU (anti-BrdU, Abcam, ab6326; 1/250) and MPM2 (anti-MPM2, Millipore, #05–368; 1/250) was performed as previously described (58 (link)).
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5

Immunohistochemical Analysis of Mouse Brain

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Brains were fixed with 4% paraformaldehyde for 24 h, transferred to 30% sucrose for 3 days and stored at – 20 °C in cryoprotectant storage solution until use. Brains were cut into 30-µm coronal sections. Free-floating sections were washed in PBS and incubated in blocking solution (PBS, 5% normal goat serum, 0.2% Triton X-100) for 3 h at room temperature. Sections were incubated with primary antibodies in blocking solution overnight at 4 °C. The primary antibodies used were as follows: ZO-1 (Invitrogen, 61-7300, 1:1000, CA), BrdU (Abcam, ab6326, 1:250, Cambridge, UK), NeuN (Millipore, ABN78, 1:500, MA, USA), 6E10 (anti-Aβ aa 1–16 antibody, Biolegend, SIG39320, 1:500, CA), Iba-1 (Novus Biologicals, NB100-1028, 1:150, CO, USA or Wako, 19-19741, 1:150, VA), CD68 (Bio-Rad, MCA1957, 1:150, CA), and GFAP (Abcam, ab53554, 1:150, MA). After the primary immunoreaction, sections were incubated with Alexa 488 (Invitrogen, A11008, 1:500, CA)  or Alexa 594 (Abcam, A150156, 1:250, MA) conjugated secondary antibodies. For detection of Adu penetration into the brain, brain sections were incubated with anti-human IgG Alexa 555 (Invitrogen, A21433, 1:200, CA). Immunostaining of the sections was visualized with an LSM 700 confocal microscope (Carl Zeiss, Jena, Germany) or an Axio Imager M2 (Carl Zeiss) light microscope. Images were analyzed using ImageJ software (Version 1.52a, NIH, USA).
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