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3 protocols using goat anti rat alexafluor 568

1

Immunofluorescent Staining of Kidney Sections

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Frozen sections of kidney were stained as described previously53 (link). Slides were fixed in 2% paraformaldehyde solution for 10 minutes and x3 washed in PBS before permeabilisation with PBS/1% triton for 15 minutes and then washed again x3. Sections were stained with αCOL4A4 at a 1:100 dilution (clone RH4253 (link)) and aWT1 (clone C-19, Santa Cruz). After washing, sections were stained with goat anti-rat Alexa Fluor 568 and goat anti-rabbit Alexa Fluor 488 (ThermoFisher) at a dilution of 1:1000.
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2

Immunolabeling of Ciliary and Endocrine Structures

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OCT-embedded tissues were sectioned at 12 μm or 20 μm. Sections were rehydrated and blocked in antibody wash (5% heat inactivated goat serum, 0.1% Triton X-100 in Tris-Buffered Saline) for 45 minutes. Tissues were incubated with primary antibodies overnight at 4°C, washed three times with 0.1% Triton X-100 in Tris-Buffered Saline (TBST), and incubated with secondary antibodies for 1 hour at room temperature. Tissues were washed three times with TBST and incubated with Hoechst 33342 for 5 minutes. Slides were coverslipped with ProLong Gold (ThermoFisher) mounting media and imaged on a BioTek Lionheart FX microscope. Primary antibodies used were: mouse anti-ARL13B (1:1000, NeuroMab, N295B/66); rabbit anti-acetylated α-tubulin (1:1000,Cell Signaling, 5335); mouse anti-acetylated α-tubulin (1:2500, Sigma, T7451); chicken anti-ACIII (1:1000, Encor, CPCA-ACIII); rat anti-insulin (1:1000, R&D systems, MAB1417); rabbit anti-glucagon (1:2000, Abcam, ab92517). Secondary antibodies used were goat anti-mouse AlexaFluor 488, goat anti-chicken AlexaFluor 647, goat anti-rat AlexaFluor 568 and donkey anti-rabbit AlexaFluor 555 (1:500, ThermoFisher).
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3

Measuring Alveolar Diameter via Immunofluorescence

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Mean linear intercept (MLI), a measure of alveolar diameter, was determined on formalin-fixed, paraffin-embedded mouse lung tissue (10 (link)). Sections (3 per lung) were blinded to two reviewers and the measurements were averaged. CLEC5A was detected by α-CLEC5A antibody (clone 226402, R&D Systems). Primary antibody (1:400 dilution) was incubated overnight at 4°C and detected the following day with goat anti-rat AlexaFluor 568 (ThermoFisher Scientific). Nuclear counterstaining with 4’,6-diamidino-2-phenylindole (DAPI; Sigma Chemical, 1:2,000), facilitated identification of macrophage. Images were captured using a Nikon A1 Inverted confocal microscope (Nikon, Tokyo, Japan) at Cincinnati Children’s Hospital Medical Center Confocal Imaging Core.
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