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69 protocols using colorimetric assay

1

Fecal Lipid Quantification Protocol

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Feces from each mouse of DIO3 were resuspended in a normal saline solution and crushed with a spatula. Then, the same volume of chloroform/methanol solution (2:1) was added to proceed with the lipid extraction. The suspension was homogenized and then centrifuged 10 min at 1000g. To collect the lipid phase, the bottom of the tube was pierced and the lipid phase was collected in a pre-weighed glass vial. Solvent from the lipid phase was evaporated under a hood for 24h. Then, the vials containing the lipids which had been extracted from feces, were weighed again to obtain the lipid mass. They were further resuspended in cholesterol buffer 10X (600μL assay buffer/g of feces) (Cayman Chemical) by strong vortexing.
Total cholesterol concentration was quantified in lipid feces suspensions using a colorimetric assay (Cayman Chemical) according to the manufacturer’s instruction.
Triglycerides concentration was quantified in lipid feces suspensions using a colorimetric assay (Cayman Chemical) according to the manufacturer’s instruction.
Fatty acid concentration was quantified in lipid feces suspensions using a fluorimetric assay (Biovision) according to the manufacturer’s instruction.
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2

Metabolic and Renal Biomarkers in Diabetes

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The following information was extracted from electronic medical records: age, sex, duration of diabetes, body mass index (BMI), systolic blood pressure (SBP), diastolic blood pressure (DBP), and total daily dose of insulin (TDD). Blood and urine samples were obtained during routine medical checkups in hospitals. The glycated hemoglobin (HbA1c) level and the serum levels of creatinine (Cr), total-cholesterol, low-density lipoprotein (LDL)-cholesterol, high-density lipoprotein (HDL)-cholesterol, and triglycerides (TG) were collected from electronic medical records. Based on the serum Cr level, the estimated GFR (eGFR) was calculated according to the equation of the Japanese Society of Nephrology:
eGFRml/min/1.73m2=194×Cr1.094×age0.287(×0.739iffemale).
In addition, we measured urinary Cr levels and urinary albumin levels by a colorimetric assay (Cayman chemical, Ann Arbor, USA) and an enzyme-linked immunosorbent (ELISA) assay (Proteintech, Tokyo, Japan), respectively. The serum phosphate (Pi) and urinary Pi levels were examined at a commercial laboratory (SRL, Tokyo, Japan). Moreover, tubular reabsorption of phosphate (TRP) was calculated as follows:
TRP=1(urinaryPi×serumCr)/(urinaryCr×serumPi).
Finally, we measured serum active full-length FGF23 levels by an ELISA (Kainos, Tokyo, Japan) [28 (link)].
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3

Quantifying Urinary Mouse Albumin by RID Assay

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Mouse albumin in urine was measured by radial immunodiffusion assay (RID) as previously described [68 (link)]. Briefly, rabbit anti-mouse albumin antibody (Accurate Chemical, Westbury, NY) and rabbit serum (Pel-Freez, Rogers, AR) were incorporated into a thin layer of 1.5% type I, low EEO agarose gel (Sigma-Aldrich) in 0.5 M veronal buffer. A small volume of urine was placed in a well cut into the agarose gel. While urine sample diffused from the well, specific anti-albumin antibody reacted in the agar forming a halo of precipitation around the well. After the antibody reaction reached saturation, the diameter of the halo was measured. The size of the halo was related directly to the albumin concentration in the urine based on standard curve prepared from known concentrations of purified fraction V mouse albumin standards (MP Biomedicals, Irvine, CA). Creatinine was measured in the urine via a colorimetric assay (Cayman Chemical, Ann Arbor, MI) and an albumin to creatinine ratio was calculated.
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4

Albuminuria Measurement in FSGS

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Spot urines were collected from all animals at baseline, 7, 14 and 28 days of FSGS. Urinary mouse albumin concentration was measured by radial immunodiffusion assay (RID) as previously described.52 (link) Creatinine was measured in the urine via a colorimetric assay (Cayman Chemical, Ann Arbor, MI) and an albumin to creatinine ratio was calculated.
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5

Comprehensive Metabolic Hormone Analysis

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At each time point, blood was collected in a vacutainer treated with EDTA (BD Vacutainer®) and placed on ice immediately for later glucose analysis via the glucose oxidase method using a colorimetric assay (Cayman Chemical Company, Ann Arbor, MI, USA). In addition, EDTA tubes were treated with diprotinin-A (0.034 g/L blood; MP Biomedicals), sigma protease inhibitor (1 g/L blood; Sigma-Aldrich, St. Louis, MO, USA) and Roche Pefabloc (1 g/L of blood) for analysis of gut and metabolic hormones. After blood collection, samples were centrifuged and the supernatant was collected and frozen at −80 °C for later determination. Metabolic-related hormones were simultaneously quantified by a multiplex assay (Millipore, St. Charles, MO, USA) according to the manufacturer’s protocol. Analytes included C-Peptide, ghrelin, glucose-dependent insulinotropic peptide (GIP), glucagon-like peptide-1 (GLP-1) (active), glucagon, insulin, leptin and pancreatic polypeptide YY (PYY) (total). The assay sensitivities of these markers ranged from 0.6–87 pg/mL.
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6

Protocol for Lipogenesis and Lipolysis Assays in Adipocytes

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For the lipogenesis assay, mature adipocytes from iWAT and 3T3-L1 adipocytes were isolated to measure lipid accumulation by a colorimetric assay (Cayman Chemical Company, MI, USA)51 (link). Approximately 75 μL of Lipid Droplets Assay Fixative (Cayman Chemical Company, MI, USA) was added to each well and incubated for 15 min. Wells were washed with a wash solution twice for 5 min each and left to dry completely by placing the plate under a blowing hood. Dye extraction solution was added, the wells were gently mixed for 20 min and the degree of lipogenesis was quantified from lipid droplets in cells by obtaining the absorbance at a single fixed wavelength of 490 nm with a microplate reader. For the lipolysis assay, isolated adipocytes from iWAT were incubated in phenol red-free DMEM supplemented with 2% fatty acid-free bovine serum albumin (BSA) for the indicated time at 37 °C in the presence or absence of 10 μm isoproterenol. The glycerol content in the medium was measured colorimetrically at 540 nm according to the instructions of the Lipolysis colorimetric assay Kit (Sigma-Aldrich, USA) against a set of glycerol standards. The cells were then washed with ice-cold PBS and lysed in 1% Triton X-100 buffer, and the protein concentration was determined and used to normalise glycerol release. All experiments were carried out in triplicate.
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7

Quantitative Protein and Cytokine Analysis

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BALF protein and lactate dehydrogenase were measured by a standard BCA assay and a colorimetric assay (Cayman Chemical, Ann Arbor, MI, USA), respectively. BALF cytokine, chemokine, and growth factor content was determined by Bioplex-Pro Mouse Cytokine 23-plex assay (Bio-Rad Laboratories, Hercules, CA, USA). All assays were performed in accordance with manufacturer’s instructions.
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8

Oxidant Activity Measurement in Brain

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Lipid peroxidation was assessed using thiobarbituric acid-reactive substances (TBARS) as indicators, following Mihara and Uchiyama [70 (link)]. Advanced oxidation protein products (AOPP) were determined spectrophotometrically according to Barsotti et al. [71 (link)], and nitric oxide species (NOx) were monitored by a colorimetric assay (Cayman Chemical, Ann Arbor, MI, USA) as described by Castillo et al. [72 (link)]. A detailed description of all these methods for measuring oxidant activity in the brain can be found in Coimbra-Costa et al. [28 (link)].
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9

Colorimetric Assay for Glucose Consumption

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Glucose levels were measured using a colorimetric assay (Cayman Chemical Company, Ann Arbor, MI) based on the glucose oxidase-peroxide reaction, according to the manufacturer's protocol. Cells were pelleted and re-suspended at a concentration of 106 cells/ml in glucose-free/pyruvate-free IMDM without addition of pyruvate but supplemented with 1.0 mg/ml glucose rather than the 4.5 mg/ml present in routine IMDM medium, to prevent the assay from being overwhelmed by a high level of glucose. The medium was also supplemented with 10% FBS. Cells were incubated for 24 h, pelleted, and then 5 μl of supernatant was used. Absorbance was monitored at 570 nm, using a VersaMax tunable microplate reader (Molecular Devices, Sunnyvale, CA). Glucose consumption (%) was calculated as follows: 1 – (glucose level in experimental)/(glucose level in medium alone) × 100.
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10

Hepatic Lipid Content Quantification

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Hepatic lipid content was measured from liver homogenates as described previously54 (link). Briefly, frozen liver samples (~50 mg) were homogenized in 1.5 ml of 40 mM Tris-HCl buffer (pH 7.4) on ice and centrifuged at 12,000 rpm for 15 minutes at 4 °C. Cholesterol levels were measured using the Infinity Cholesterol Reagent (Thermo Scientific, Middletown, VA) and triglyceride levels were measured by a colorimetric assay (Cayman Chemicals, Ann Arbor, MI). Protein concentration was determined using the BCA assay kit (Thermo Scientific, Middletown, VA).
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