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6 protocols using mgcl2

1

Tilapia Protein Extraction Protocol

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Fresh tilapia (500 g ± 100 g) was purchased from the Yonghui supermarket (a local supermarket in Fuzhou, China). Curdlan was purchased from VWR Life Science Amresco Products, Avantor Performance Materials, Inc. Tris, HCl, KCl, NaN3, β‐mercaptoethanol, Mg (CH3COO)2, ethylene glycol‐bis‐(2‐chloroethyl) tetraacetic acid (EGTA), ATPNa2, KHCO3, MgCl2, formaldehyde, glutaraldehyde, phosphoric acid salt buffer, ethanol, and acetone were obtained from Solarbio Science & Technology Co., Ltd. The above reagents were all of analytical grade.
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2

Nucleic Acid and Carbohydrate Preparation

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Lumbda DNA (λDNA) (48.5 kb) was purchased from Thermo Fisher Scientific (MA, USA) with concentration of 300 μg/mL. The storage buffer for λDNA was 10 mM Tris–HCl (pH 7.6) containing 1 mM EDTA. Hemoglobin (HB) (H2625) was purchased from Sigma Co., Ltd. Salmon sperm DNA (D1626) purchased from Sigma was dissolved in ddH2O at a concentration of 300 ng/μL. Analytical pure starch, NaCl and MgCl2 were purchased from Beijing Solarbio Science & Technology Co., Ltd. All the carbohydrates were dissolved in ddH2O with concentration of 40 mg/mL for storage. miR168a, miR16, miR206, and short‐stranded DNA were synthesized by Genscript Biotech and were dissolved in sterile Milli‐Q water (ddH2O) at a 10 μM concentration for use as stock solutions.
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3

Astrocyte Culture and Modified Hanks' Balanced Salt Solution

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Astrocytes of the U87 cell line were purchased from the American Type Culture Collection (ATCC, Manassas, USA). U87 cells were cultured in Dulbecco’s modified Eagle’s Medium (Invitrogen, New York, USA) containing 10% fetal bovine serum (GIBCO BRL, Grand Island, NY, USA) and 1% penicillin-streptomycin (Hyclone, South Logan, UT, USA) maintained at 37°C under 5% CO2. Modified Hanks’ balanced salt solution (MHBSS) was prepared to simulate blood plasma, to which was added albumins (Bovine Serum Albumin Fraction V, BioFRoxx, Einhausen, Germany) and Ca2+ (concentrations to 2.4 mmol/L). The electrolyte concentrations were adjusted using CaCl2, MgCl2, NaCl and KCl (Solarbio, Beijing, China). The pH and OP were maintained at 7.4 and 300 ± 10 mOsmol/kg. MHBSS components are shown in the Supplementary Materials And MethodsTables S1 and S2.
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4

Isolation of Cytosolic and Mitochondrial Fractions

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Following transfection with the pIRVP3IL-18HN recombinant plasmid for 72 h, 2×106 H22 tumor cells were lysed in 300 µl of buffer A, consisting of 10 mM 4-(2-hydroxyethyl)-1-piperazineethanesulfonic acid-KOH (pH 7.4), 0.25 M sucrose, 1 mM ethylene glycol-bis(β-aminoethyl ether)-N,N,N',N'-tetraacetic acid, 1 mM EDTA, 1 mM DTT, 10 mM MgCl2 and 1 mM phenylmethylsulfonyl fluoride (all obtained from Solarbio Science & Technology Co., Ltd.) and homogenized in a Dounce homogenizer (IKA, Guangzhou, China) for 10 min. The supernatant was mixed with TNC buffer, consisting of 10 mM Tris-acetate (pH 8.0) (HD Biosciences Co., Ltd.), 0.5% Nonidet P-40 (HD Biosciences Co., Ltd.) and 5 mM CaCl2 (Solarbio Science & Technology Co., Ltd.), and the precipitate was dissolved in buffer A to obtain the cytosol, which together with the mitochondria were stored at −80°C for subsequent western blot analysis.
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5

Cultivation of N. flagelliforme cells

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The N. flagelliforme cells (TCCC11757) used in this experiment were provided by the Tianjin Key Lab of Industrial Microbiology (Tianjin, China).
The standard monosaccharides were purchased from Sigma Chemical Co. (St. Louis, MO, USA). H2O2, MgCl2, CaCl2, methylene blue (MB) and 2,2′-azo-bis(2-amidinopropane)-dihydrochloride (AAPH), propyl gallate (PG), 2,4-dichloro phenoxy acetic acid (2,4-D) and gibberellic acid (GA), salicylic acid (SA) and jasmonic acid (JA) were purchased from (Solarbio, Beijing, China). All of the chemicals used were analytically pure. PG and abscisic acid (ABA) were made in amber glass vials and stored in the dark at −20 °C. The remaining reagents were prepared in amber glass bottles and stored at 4 °C away from light.
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6

α-Ketoglutarate Detection Protocol

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The detailed procedures for α-ketoglutarate detection were carried out as previously described [53 (link)]. In short, cells were lysed with RIPA buffer (Beyotime, P0013) containing phosphatase and protease inhibitors (Beyotime, P1046), and centrifuged at 15000 × g for 5 min at 4°C. Then, the 50 μl lysates were used for detection in 450 μl assay solution (100 mM KH2PO4 [Solarbio, P7392], pH 7.2, 10 mM NH4Cl [Solarbio, A7320], 5 mM MgCl2 [Solarbio, M8161], 0.15 mM NADH, 5 U GLUD1 [Sigma-Aldrich, G2626]) and incubated for 10 min at 37°C. The absorbance at 340 nm was measured. The decreased absorbance was used to detect the level of α-ketoglutarate.
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