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Anti active caspase 3

Manufactured by Cell Signaling Technology
Sourced in United States, United Kingdom, Denmark

Anti-active caspase-3 is an antibody that detects the active form of caspase-3, a key enzyme involved in the apoptosis (programmed cell death) pathway. The antibody specifically recognizes the cleaved/active form of caspase-3, providing a tool to monitor apoptosis in various experimental systems.

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41 protocols using anti active caspase 3

1

Immunofluorescence Assay for Apoptosis

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At the end of capsaicin and SMF treatments, cells were washed with PBS and fixed with 3.7% paraformaldehyde (PFA; Sigma) in PBS for 15 min at RT. Fixed cells were then permeabilized with 0.1% Triton X-100 in PBS for 15 min. Nonspecific protein binding was blocked with 1% BSA in PBS for 20 min at RT. After washing three times with PBS, the cells were incubated with anti-β-tubulin (1:1000 dilution; Abcam) and anti-active caspase-3 (1:800 dilution; Cell Signaling Technology) primary antibodies overnight at 4°C. The cells were then washed three times in PBS, and incubated in the Alexa Fluor 488-conjugated donkey anti-goat secondary antibody and the Alexa Fluor 647-conjugated donkey anti-rabbit secondary antibody (1:500 dilution; Jackson ImmunoResearch Inc.) for 1 h at 37°C in the dark. The coverslips were mounted to slides in mounting medium with DAPI (Abcam). The mounted samples were examined by a Zeiss LSM 880 inverted laser scanning confocal microscope. Pictures of randomly selected areas were taken for each sample and representative micrographs are shown in the figures.
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2

Generation and Characterization of Anti-BEX4 Antibodies

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Mouse polyclonal antibodies against human BEX4 protein were generated in C57BL/6 mice. Briefly, purified GST-BEX4 protein was injected four times intraperitoneally. Rabbit polyclonal antibodies against C-terminal polypeptides 89–106 of human BEX4 protein were commercially generated (Youngin Frontier, Seoul, Korea). The other antibodies used in this study were as follows: anti-GFP, anti-PLK1, anti-CDK1, anti-aurora A, anti-cIAP-1, anti-cdc20 (Santa Cruz Biotechnology, Dallas, TX, USA), anti-actin (Sigma-Aldrich, St. Louis, MO, USA), anti-poly(ADP-ribose) polymerase-1 (PARP), anti-cleaved-caspase 9, cleaved-caspase 7, anti-active-caspase 3, anti-phospho-threonine (p-Thr) (Cell Signaling Technology, Danvers, MA, USA), anti-aurora B (BD Biosciences PharMingen, San Diego, CA, USA), anti-securin (PTTG1; Zymed, San Francisco, CA, USA), anti-Myc (Bethyl Laboratories, Montgomery, TX, USA), and Alexa Fluor (Invitrogen, Leek, The Netherlands). The following reagents were used: MG132, cycloheximide (CHX), dimethyl sulfoxide (DMSO) (AG Scientific, San Diego, CA, USA), nocodazole (Sigma-Aldrich), and PLK1 kinase inhibitor BI2536 (Axon Medchem, Groningen, Netherlands).
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3

Detecting Apoptosis in Organ of Corti

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To determine whether cell death in the organ of Corti occurred via apoptosis, we performed immunohistochemistry for active caspase-3 and TUNEL assay. After fixation, specimens were permeabilized with 0.1% Triton X-100 in PBS (PBS-Tx) for 30 min at RT and blocked with 5% normal goat serum for 1 h at RT. The specimens were incubated with anti-active caspase-3 (1:1000; Cell Signaling Technology, Beverly, MA, USA) diluted in blocking solution overnight. After three rinses with PBS, samples were labeled with Alexa Fluor® 488-conjugated goat anti-rabbit immunoglobulin G (1:1000; Invitrogen, La Jolla, CA, USA) diluted in blocking solution for 1 h at RT. F-actin was labeled with Alexa Fluor® 555-conjugated phalloidin in PBS-Tx for 1 h at RT.
To detect DNA fragmentation, a marker of apoptotic cell death, we used the TUNEL assay kit (Promega, Madison, WI, USA) following the manufacturer’s protocol. Specimens were fixed with 4% paraformaldehyde in PBS for 15 min at RT and rinsed with PBS. And then, they were permeabilized with 0.1% PBS-Tx in 0.1% sodium citrate for 30 min at 37 °C and stained with TUNEL working solution for 30 min at 37 °C. F-actin was labeled with Alexa Fluor 555-conjugated phalloidin in PBS-Tx for 3 h at RT in the dark. Specimens were mounted on glass slides using Fluoromount and visualized using a Zeiss Axio Imager A2 fluorescence microscope.
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4

Immunoblotting Assay for VEGFR1 and VEGFR2

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Immunoblotting experiments were performed as previously described.21 (link) The antibodies used were: anti-sVEGFR1-i13 polyclonal antibody, generated against a peptide mapping in the unique C-terminus,14 (link) anti-VEGFR2 (clone 55B11), anti-actin and anti-active caspase-3 from Cell signalling. Anti-tubulin was from Santa Cruz, anti-actin from Sigma-Aldrich, anti-phospho-VEGFR1-Tyr1213 from Millipore and anti-phospho-VEGFR2-Tyr1214 from Invitrogen. Antibody against total β1 integrin (serum 227) was kindly provided by Dr Albiges-Rizo (Institute For Advanced Biosciences, Grenoble). The other antibodies used for Proximity Ligation Assay and immunohistochemistry were: mouse anti-β1 integrin (4B7R) and anti-VEGFR2 (4B4) antibodies from ThermoFisher Scientific, rabbit anti-VEGFR2 from Sigma-Aldrich and anti-VEGFR1 (Santa Cruz).
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5

Immunohistochemical Analysis of Mouse Brain

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Mice were deeply anaesthetized and transcardially perfused with phosphate-buffered saline (PBS) followed by 4% paraformaldehyde (PFA) in 0.1 M phosphate buffer (PB). Then, the brains were removed and postfixed in the same fixative for 2 h at 4 °C and subsequently cryoprotected in 30% sucrose in PB. Frozen sections, either 10 or 50 μm thick, were prepared on a microtome. Sections were washed with PBS and incubated for 1 h at room temperature in blocking buffer: 20% Block Ace (KAC Co., Ltd.), 5% normal goat serum (NGS), 0.1% Triton X-100, 0.1% azide in PBS. Then, the sections were incubated overnight with primary antibody in antibody dilution buffer (5% Block Ace, 5% NGS, 0.1% Triton X-100, 0.1% azide in PBS) at 4 °C. Sections were then washed with 0.1% Triton X-100 in PBS and incubated for 1 h with secondary antibody in antibody dilution buffer at room temperature. The antibodies used were as follows: anti-calbindin (1:500; Sigma-Aldrich), anti-CTCF (1:1000; Cell Signaling Technology), anti-VGluT2 (1:10,000; Millipore), anti-active caspase-3 (1:500; Cell Signaling Technology), anti-calnexin (1:500; Enzo), anti-KDEL (1:2000; MBL), and anti-IP3R (1:500; abcam). For haematoxylin and eosin (HE) staining, sections were stained with Mayer’s haematoxylin and eosin Y (Muto Pure Chemicals, Tokyo, Japan).
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6

Protein Analysis of Brain Tissue

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Animals were anesthetized by isoflurane inhalation, and the brains were immediately recovered after decapitation and quickly placed in dry ice. Tissue and cell samples were homogenized in a lysis buffer (Ozyme, Saint-Quentin-en-Yvelines, France) or RIPA buffer (Sigma-Aldrich) and analyzed by electrophoresis and protein transfer onto a PVDF membrane (Thermo Fisher Scientific). For all experiments, 30 μg of proteins was used. Membranes were probed with polyclonal antibodies against TH (Millipore) diluted 1:200, anti-active caspase 3 diluted 1:200 (Cell Signaling, Danvers, USA), phosphoTH-Ser31 diluted 1:500, phosphoTH-Ser40 (Ozyme) diluted 1:400, BiP/GRP78 (Sigma-Aldrich) diluted 1:100, DJ-1/PARK7 (Millipore) diluted 1:100, α-synuclein (Sigma-Aldrich) diluted 1:250, anti-H3K27me diluted 1:500 (Diagenode, Ougrée, Belgium) and anti-H3 diluted 1:500 (Abcam). After incubation with Alexia conjugated secondary antibodies (Thermo Fisher Scientific) diluted at 1:1000, the resulting immune complexes were visualized using the ECL chemiluminescence system (Thermo Fischer Scientific). An antibody against α-tubulin (Sigma-Aldrich) or GAPDH (Sigma-Aldrich) diluted at 1:1000, was used as a control to ensure equal protein loading.
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7

Quantifying Apoptotic Cells in Intestinal Crypts

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Apoptotic cells in the crypts were quantified by two complementary methods: morphologic analysis via H&E-staining and functional analysis via active caspase-3 staining (25 (link)). For both methods, apoptotic cells were quantified in 100 contiguous well-oriented crypt-villus units per animal by an examiner blinded to sample identity. Apoptotic cells were identified on H&E-stained jejunal sections by characteristic nuclear condensation and fragmentation. For active caspase-3 staining, jejunal sections were deparaffinized, rehydrated, and incubated in 3% hydrogen peroxide for 10 minutes. Slides were then immersed in Antigen Decloaker (Biocare Medical, Concord, CA) and heated in a pressure cooker to facilitate antigen retrieval for 45 minutes. Following this, sections were blocked with 20% goat serum (Vector Laboratories, Burlingame, CA), and incubated with rabbit polyclonal anti-active caspase-3 (1:100; Cell Signaling Technology) overnight at 4°C. Sections were then incubated with goat anti-rabbit biotinylated secondary antibody (1:200; Vector Laboratories) for 30 minutes at room temperature, followed by Vectastain Elite ABC reagent (Vector Laboratories) for an additional 30 minutes and developed with diaminobenzidine followed by hematoxylin counterstaining.
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8

Antibody Source and Characterization

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Polyclonal rabbit anti-GFP and anti-Myc were generated as described (Mizutani et al, 2013 (link)). Mouse monoclonal glial fibrillary acidic protein (GFAP) antibody was from Chemicon (Temecula, CA, USA). Goat polyclonal anti-HSPA5, mouse monoclonal anti-GFP and anti-β-tubulin were from Santa Cruz Biotech. (Santa Cruz, CA, USA). Goat polyclonal anti-SIL1 was from abcam (Tokyo, Japan). Mouse monoclonal anti-Flag M2 and rabbit polyclonal anti-Flag were from Sigma (Tokyo, Japan). Rabbit polyclonal anti-active caspase3 and anti-Ki67 were from Cell Signaling Technology (Danvers, MA, USA) and Thermo Scientific Japan (Yokohama, Japan), respectively.
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9

Cytarabine-Induced Cell Cycle Checkpoint Response

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Reagents were obtained from: cytarabine (ara-C, Hospira, Inc., Lake Forest, IL), anti-active caspase-3, anti-p27, anti-CDT1 (Cell Signaling, Beverly, MA), anti-phospho-Ser317- and total CHK1, and γH2AX antibodies (Epitomics, Burlingame, CA), anti-β tubulin and ribose (Sigma, St. Louis, MO), anti-proliferating cell nuclear antigen (PCNA, Dako, Glostrup, Denmark), goat anti-rabbit horseradish peroxidase (HRP)-conjugated secondary antibody (Jackson Laboratories, West Grove, PA), rat anti-mouse IgG2a-HRP antibody (Serotec, Raleigh, NC), sheep anti-mouse-HRP and donkey anti-rabbit-HRP (Amersham, Pittsburgh, PA).
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10

Histological Analysis of Mammary Tissue

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Example 4

Histology, Whole-Mount, and Immunohistochemistry.

For histological analysis, 5 μm sections were cut and stained with hematoxylin and eosin (H&E). Whole-mount staining of mammary glands was performed as described8. For immunoperoxidase staining paraffin-embedded sections were dehydrated and antigenic epitopes exposed using a 10 mM citrate buffer or microwaving. Sections were incubated with antibodies to cytokeratine 5, cytokeratine 14, E-cadherin, anti-Ki67 (Novocastra) and anti-active Caspase 3 (Cell Signaling) and visualized using peroxidase-conjugated secondary antibodies. Histomorphometric indices (proliferation and apoptosis) were calculated as the number of positive epithelial cells divided by the total number of epithelial cells, with no fewer than 1000 nuclei for Ki67 stainings and no fewer than 5000 cells for active Caspase 3 staining counted per section.

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