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Av 600 mhz spectrometer

Manufactured by Bruker
Sourced in Germany

The AV-600 MHz spectrometer is a high-performance nuclear magnetic resonance (NMR) instrument designed for research and analytical applications. It operates at a frequency of 600 MHz and is capable of performing a variety of NMR experiments to analyze the structure and properties of chemical compounds.

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21 protocols using av 600 mhz spectrometer

1

NMR Spectroscopy of Compounds M1' and M3'

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1H-NMR spectra were measured on a Bruker AV 600 MHz spectrometer, and chemical shifts were reported in ppm downfield relative to tetramethylsilane. The isolated compound M1’ was dissolved in methanol-d4 and M3’ were dissolved in chloroform-d1.
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2

Synthesis and Characterization of Novel Organic Compounds

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Stoppers 2a, 2c, 2d, 3, 4, and 5 and reagents [1,10-decanediamine, methyl 2-(4-butoxyphenoxy)acetate, and so on] were commercially available (99%) and used as received. Further purification and drying of the solvents by standard methods were employed and distilled prior to use when necessary.
1H NMR and 13C NMR spectra were recorded on a Bruker AVIII-400 MHz spectrometer. 2D NMR spectra were recorded on a Bruker AV-600 MHz spectrometer. All NMR used tetramethylsilane (TMS) as the internal standard.
A Bruker Micro-TOF spectrometer was used to investigate the high-resolution mass (ESI) of the compounds.
A Bruker Smart APEX-2 CCD diffractometer was used to investigate the X-ray single-crystal structures.
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3

NMR Mapping of FtsQp Ligand Interactions

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Twenty selected hits from the TINS screen were tested at 1 mM and 4 mM in 15N-FtsQp, to look for chemical shift perturbations in the 1H,15N-HSQC spectrum. In all experiments, 15N-FtsQp was present at 200 µM concentration in a buffer containing 20 mM Na2HPO4 and 50 mM NaCl at pH 7.5. 1H,15N-HSQC experiments were acquired at 25 °C in a Bruker AV 600 MHz spectrometer equipped with a cryoprobe. During the experiment, the proper folding of the protein was confirmed by repeatedly injecting one of the fragment mixtures as a control. A reference titration of DMSO was used to subtract chemical shift perturbations not related to fragment binding.
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4

Comprehensive Analytical Characterization

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Optical rotations were performed on a P-1020 polarimeter. IR spectra were measured on a Bruker FT-IR Tensor 27 spectrometer with KBr pellets. UV spectra were obtained on Shimadzu UV-2401A spectrometer. 1D and 2D-NMR spectra were recorded on Bruker AV-600 MHz spectrometer. Coupling constants were expressed in Hertz and chemical shifts were given on a ppm scale with tetramethylsilane as an internal standard. HRESIMS were recorded on an API QSTAR Pulsar 1 spectrometer. Column chromatography (CC) was performed on silica gel (200–300 mesh, Qingdao Marine Chemical Ltd., Qingdao, People’s Republic of China), Sephadex LH-20 (Pharmacia Fine Chemical Co., Ltd., Sweden), and MCI-gel CHP 20P (75–100 μm, Mitsubishi Chemical Co., Ltd). Thin-layer chromatography (TLC) was carried out on pre-coated silica gel plates (Qingdao Marine Chemical Co., Ltd.) with CHCl3/MeOH (15:1, 4:1, v/v) as developing solvents and spots were visualized by Dragendorff’s reagent. High performance liquid chromatography (HPLC) was performed using Waters 600 pump with semi-preparative C18 columns (150 × 9.4).
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5

Isolation of Actinomadura Metabolites

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For isolation of compounds, the ethyl acetate extract of Actinomadura sp. ATCC 31491 grown on MSF agar was fractionated on a Sephadex LH-20 column with MeOH elution. After analysis with HPLC, the fractions containing metabolites of interest were combined, and the target compounds were purified from these fractions by reversed-phase semipreparative HPLC (YMC-Triart C18, 5 μm, 10 mm ID × 250 mm) (UV detection at 280 nm). Compounds 1 (40 mg, tR = 33.0 min) and 2 (30.1 mg, tR = 45.0 min) were purified with 52% (acetonitrile+ 0.05% FA)/(H2O + 0.05% FA) at 4 mL/min. The 1H- and 13C and 2D NMR spectra were recorded on a Bruker AV-600 MHz spectrometer using CDCl3 as the solvent.
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6

NMR Analysis of Protein Dynamics

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1H-15N-HSQC spectra were recorded as SOFAST versions48 (link) at 35 °C on a Bruker AV 600 MHz spectrometer (Bruker, Karlsruhe, Germany) equipped with a cryo-probehead. TopSpin (version 3.1, Bruker) was used for data processing, including zero filling and linear prediction. The transfer of previous assignment13 (link) and general data evaluation were done using the CCPN software package (version 2.1.5)49 (link).
CSP was calculated using the following formula50 (link):

where 1H and 15N refer to the mathematical difference of individual hydrogen and nitrogen chemical shifts of two distinct peak maxima. Gyromagnetic ratio (γi) of nuclei i, where i is 1H or 15N, is used for normalization.
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7

Spectroscopic Characterization of Compounds

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IR spectra were measured on a Bruker Tensor 27 FTIR spectrometer using KBr disks. NMR spectra were performed with a Bruker AV600 MHz spectrometer with TMS as an internal standard. HRMS–ESI data were obtained through an Agilent 1290 UPLC/6540 Q-TOF mass instrument. Column chromatography (CC) was performed using silica gel (30–400 mesh, Qingdao Marine Chemical Inc., China), Sephadex LH-20 (25–100 µm, Pharmacia Biotech Ltd., Sweden), and MCI gel (75–150 µm, Mitsubishi Chemical Corporation, Tokyo, Japan). Semipreparative HPLC was conducted on a HITACHI Chromaster system equipped with a DAD detector, a YMC-Triart C18 column (250 × 10 mm, i.d. 5 μm), and a flow rate of 3.0 mL/min. LC–MS was performed using an Agilent 1200 series HPLC system coupled to an Agilent q TOF 6540 mass spectrometer with a YMC-Triart C18 column (250 × 4.6 mm, i.d. 5 μm) and a flow rate of 1.0 mL/min.
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8

Detailed Spectroscopic Characterization

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All reactions were performed in atmosphere unless noted. All reagents were commercially available and use as supplied without further purification. NMR spectra were collected on either an Agilent DD2400 MHz spectrometer or a Bruker AV-600 MHz spectrometer with internal standard tetramethylsilane (TMS) and signals as internal references, and the chemical shifts (δ) were expressed in ppm. High-resolution Mass (ESI) spectra were obtained with Bruker Micro-TOF spectrometer. The Fourier transform infrared (FTIR) samples were prepared as thin films on KBr plates, and spectra were recorded on a Bruker Tensor 27 spectrometer and are reported in terms of frequency of absorption (cm−1). X-ray data were collected on a Bruker Smart APEX-2 CCD diffractometer.
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9

Analytical Techniques for Natural Products

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Optical rotation measurements
were determined using an Autopol VI, serial no. 91003, manufactured
by Rudolph Research Analytical Hackettstown, NJ, USA. IR and UV spectra
were obtained on a Thermo Fisher Nicolet iS50 spectrometer and a Persee
TU-1950-YV-VIS spectrophotometer, respectively. ECD spectra were recorded
on a Jasco-J-810 spectropolarimeter. NMR spectroscopic data were acquired
on a Bruker AV-600 MHz spectrometer in methanol-d4H 3.31; δC 49.0).
HRESIMS was obtained in positive ion mode on a Waters Xevo G2-XS/APGC
spectrometer. Preparative MPLC was used in a Interchim Puriflash 450
instrument. Column chromatography (CC) was carried out using silica
gel (200–300 mesh; Yantai) and ODS C18 (15 μm,
Santai Technologies, Inc.). Analytical thin-layer chromatography was
performed on a silica gel FSGF254 plate. A YMC-Pack Pro
C18 column (250 × 10 mm, 5 μm) was used for
reversed-phase HPLC using a Waters 1525 separation module equipped
with a Waters 2535 pump and a 2998 photodiode array detector.
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10

NMR and Mass Spectrometric Analysis of Compounds

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Melting points were measured on a YRT-3 melting point apparatus and were uncorrected. NMR spectra were recorded at 22 °C on a Bruker AV 600 MHz spectrometer, and chemical shifts (δ) are given in parts per million (ppm). The 1H and 13C chemical shift were referenced to the CDCl3 solvent peaks at δH 7.26 and δC 77.0 ppm, respectively. Electron ionization mass spectra (EI-MS) were determined by Waters micromass ZQ-2000 mass spectrometer, and HRMS were acquired on an Angilent 1290–6540B UPLC-Q-TOF mass spectrometer, respectively. Flash column chromatography was performed with silica gel (200–300 mesh) purchased from Qingdao Haiyang Chemical Co. Ltd. All chemical reagents were obtained from Aldrich Chemical Co. and treated with standard methods before use.
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