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7 protocols using m7449

1

Cellular Stress Response Modulators

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Cells were exposed to rotenone (Rot, 1 μM; R8875, Sigma), MPP+ (50 μM, DO48, Sigma), zinc (ZnCl2, 150 μM; Z0152, Sigma), manganese (MnCl2, 2 μM; 205891000, Acros Organics), and iron (FeCl3, 1.5 mM; 157740, Sigma) for 24 hours (h). The final concentration of each agent was chosen from a dose response analysis to obtain a submaximal inhibition of cell viability. Prior to stressor addition, cells were pretreated for 1 h with YM-201636 (PIKfyve inhibitor, PIK, 200 nM; 524611, Millipore) or 5-fluoro-2-indolyl des-chlorohalopemide (PLD inhibitor, FIPI, 100 nM; F5807, Sigma) to inhibit the production of PI(3,5)P2 or PA, respectively. To inhibit the proteasome, cells were incubated with MG-132 (100 μM; M7449, Sigma) for 6 h.
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2

Dendritic Cells: Stimulation and Modulation

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At least 1×106 cDC1 and cDC2 were cultured in complete IMDM (mouse) or complete RPMI (human) and stimulated for 24, 36 or 48 hours. Compounds used are: LPS 055:B5 1-0.125 μg/ml (#L2880-10MG, Sigma Aldrich, 100 ng/ml stock in 1 X PBS), l-kynurenine (#K86251G, Sigma Aldrich, 25 mM stock in HCl 0.5 M), CpG 1826 PTO 10 μg/ ml (BioFab Research, 1 mg/ml in 1x PBS), polyinosinic:polycytidylic acid 25 μg/μl (Poly I:C, BioFab Research, 1 mg/ml stock), soluble tachyzoite antigen (STAg) 1 μg/μl (1 mg/ml stock) (Tussiwand et al., 2012 (link)), anti-IL-6 25 μg/ml (clone 20 F3, kindly provided by Louis Boon), LEAF™ Purified anti-mouse/rat CD126 (IL-6Rα chain, clone D7715A7, #115815, Biolegend), MG-132 Ready Made solution 0.5 μM (#M7449, Sigma Aldrich, 10 mM stock solution in DMSO) IL-12 10 ng/ml (#210-12-10UG, Peprotech, 100 ng/ml), L-1-methyltryptophan 1mM (#44739-1G, Sigma Aldrich, 4 mM stock in complete IMDM).
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3

Evaluating PARP Inhibitors on Cellular Responses

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The following compounds were used at the indicated final concentrations: PJ-34 (10 μM, ALX-270-289-M001, Enzo Life Science), Olaparib (1-10 μM, AZD-2281, Selleckchem), Rucaparib (1-8 μM, AG-014699, Selleckchem), Talazoparib (6.25-50 nM, BMN673, Selleckchem), β-Nicotinamide adenine dinucleotide hydrate (20-200 μM, N7004, Sigma-Aldrich), hydrogen peroxide (0.02-0.5 mM, H3420, Sigma-Aldrich), Methyl methanesulfunate, MMS (0.01%, 129925, Sigma-Aldrich), PARG inhibitor (10 μM, PDD00017273, Tocris), FK866 (1 μM, F8557, Sigma-Aldrich), MG132 (10 μM, M7449, Sigma-Aldrich), cycloheximide (50 μM, C7698, Sigma-Aldrich).
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4

Crif1 Regulates Neuronal Oxidative Stress

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SH-SY5Y, a human neuroblastoma cell line, and HT22, an immortalized mouse hippocampal neuronal cell line, were cultured as previously described.55 (link) Cells were transfected with cDNA for Crif1 (gifted from Dr. Shong (Chungnam University, Korea)), Sp1 (hMU003598; provided from Korea Human Gene Bank, Medical Genomics Research Center, KRIBB, Korea), Sp1 K16A or Mito-DsRed using Lipofectamine and Plus reagents (Invitrogen, Carlsbad, CA, USA) and Crif1 siRNA (Santa Cruz Biotechnology, Santa Cruz, CA, USA) using RNAiMax reagents (Invitrogen) for 48 h according to the manufacturer's instructions. Cells were grown to 60% confluency and treated with vehicle (dimethyl sulfoxide) or Aβ1-42 (American Peptide, Sunnyvale, CA, USA), Aβ42–1 (Bachem, Bubendorf, Switzerland) and various reagents; MG132 (10 μM; M7449, Sigma-Aldrich, St. Louis, MO, USA), 3-MA (2 mM; M9281, Sigma-Aldrich), bafilomycin (5 nM; B1793, Sigma-Aldrich), NAC (1 mM; A7250, Sigma-Aldrich), apocynin (10 μM; A10809, Sigma-Aldrich), DPI (10 μM; D2926, Sigma-Aldrich), and H2O2 (216763, Sigma-Aldrich).
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5

Cytotoxicity evaluation of NPC cells

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NPC cells (SUNE1, CNE-2, 5–8 F and CNE-1), human normal nasopharyngeal epithelial cells NP69 and human embryonic kidney (HEK) 293 T cells were purchased from Shanghai Huzhen Biotechnology Co., Ltd (Shanghai, China). SUNE1 and HEK293T cells were cultured in DMEM (A4192101, Gibco, USA), while other cells were cultured in RPMI-1640 medium (A4192301, Gibco), added with 10% foetal bovine serum (FBS; 16140071, Thermo Fisher Scientific, USA). All cells were kept in a humid incubator with 5% CO2 at 37°C. For cell treatment, cycloheximide (CHX; 5 µM; 5087390001, Sigma-Aldrich, St. Louis, MO, USA), MG132 (10 Μm; M7449, Sigma-Aldrich), actinomycin D (4 μg/Ml; SBR00013, Sigma-Aldrich) and p65 inhibitor (parthenolide; PT; 5 μmol/L; HY-N0141, MedChemExpress, New Jersey, USA), were purchased.
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6

Investigating Tau Ubiquitination and HDAC Inhibition

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BMS 303141 (BMS), Tubastatin A (TubA), MG-132 and cycloheximide were obtained from Sigma-Aldrich (SML0784, SML0044, M7449, and C104450, respectively). MG-132 (20 µM) was added to fully differentiated cells 4 h prior to protein extraction. For ubiquitinated Tau MG-132 (17.5 µM) was added to HEK293 transfected cells 15 h prior to immunoprecipitation. Treatment of TubA, (2 µM) for 24 h alone or together with MG-132 (20 µM) for the last 4 h were added to fully differentiated cells, prior to protein extraction. BMS (1 µM) was added to fully differentiated cells for 72 h prior to cells fixation and immunofluorescence analysis.
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7

Etoposide-Induced Cell Recovery Assay

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Etoposide (100 mM stock in DMSO; ab120227, Abcam) treatment was followed by three washes with complete DMEM and cells were allowed to recover for the indicated times. The concentration of etoposide was adapted depending on the cell line, most treatments of SH-SY5Y cells were performed at 60 or 100 µM etoposide, whereas 15 µM etoposide was used for IMR5 cells and 30 µM etoposide for IMR32 cells. When specified, recovery was done in the presence of 5 µg/mL nutlin-3 (5 mg/mL stock in DMSO; SC-45061, Santa Cruz), 10 µg/mL of KU-55933 (10 mg/mL stock in DMSO; SML1109, Sigma-Aldrich), 10 µM MG132 (10 mM stock in DMSO, M7449, Sigma-Aldrich) or 25 µM cycloheximide (10 mg/ml stock in H2O, 01810, Sigma-Aldrich). Vehicle DMSO was added in the controls.
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