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Alexa fluor 594 conjugate

Manufactured by Thermo Fisher Scientific
Sourced in United States, United Kingdom, Germany, Spain

The Alexa Fluor 594 conjugate is a fluorescent dye that can be used for labeling proteins, antibodies, and other biomolecules. It has an excitation maximum of 590 nm and an emission maximum of 617 nm, making it suitable for detection in the red region of the visible spectrum.

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87 protocols using alexa fluor 594 conjugate

1

Fluorescent Antibody Detection Protocol

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See Table 1. Secondary antibodies (all Life Technologies): goat anti-rabbit immunoglobulin G (IgG; H+L), Alexa Fluor 594 conjugate (A-11037), 1:1000; goat anti-rabbit IgG (H+L), Alexa Fluor 488 conjugate (ab150077), 1:1000; goat anti-mouse IgG (H+L), Alexa Fluor 488 conjugate (ab150113), 1:1000; goat anti-mouse IgG (H+L), Alexa Fluor 647 conjugate (A-21236), 1:1000; goat anti-guinea pig IgG (H+L), Alexa Fluor 594 conjugate (A-11076), 1:1000; goat anti-guinea pig IgG (H+L), Alexa Fluor 488 conjugate (A-11073), 1:1000.
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2

Immunohistochemical Staining of Retinal Cell Markers

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Donkey anti-goat Alexa Fluor® 594 conjugate, donkey anti-mouse Alexa Fluor® 594 conjugate, and donkey anti-rabbit Alexa Fluor® 488 conjugate (all from: Molecular Probes, Invitrogen Inc., Madrid, Spain) and diluted at 1:500.
In each animal, alternate sections containing the optic disk were incubated either with anti-red/green and blue opsin, with anti-rhodopsin, with anti-Iba-1, and anti-GFAP antibodies or with anti-PCNA and lectin GS-IB4 or Iba-1 or GFAP.
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3

Immunocytochemistry of Human iPSCs

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To perform the immunocytochemistry, the human iPSCs and their derivatives were fixed with 4% paraformaldehyde (FUJIFILM Wako) in PBS for 10 min. After blocking the cells with PBS containing 2% BSA and 0.2% Triton X-100 for 20 min, the cells were incubated with the anti-OCT4 (POU5F1) antibody (sc5279, Santa Cruz Biotechnology) or anti-villin 1 antibody (ab130751, Abcam) at 4°C overnight, and, finally, with an immunoglobulin (Ig)G secondary antibody, Alexa Fluor 594 conjugate (Thermo Fisher Scientific), at room temperature for 1 h.
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4

Evaluating Vascular Endothelium Viability

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To assess the viability of vascular endothelium, rat lungs (n = 3) were perfused after de-epithelialization with acetylated LDL, Alexa Fluor 594 conjugate (L35353, Thermo Fisher Scientific) diluted 1:200 for 4 hours at the conclusion of each experiment. Following incubation, lungs were perfused with 1× PBS, fixed in cold phosphate–buffered 4% paraformaldehyde for 24 hours, embedded in paraffin, and sectioned at 5-μm thickness. Following deparaffinization and DAPI staining, slides were examined using a fluorescence microscope (Olympus FSX100).
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5

Dystrophin Quantification in Muscle Fibers

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Paraffin-embedded sections were prepared and labeled with primary rabbit anti-dystrophin polyclonal antibody (Abcam, Cambridge, UK) antibody at 4°C overnight. Sections were then incubated with goat anti-rabbit IgG cross-adsorbed secondary antibody Alexa-Fluor® 594 conjugate (Thermo Fisher Scientific, Hemel Hempstead, UK). The nuclei were then stained with DAPI. The dystrophin-stained sections were examined with TissueFAXS® Spectra systems (TissueGnostics, Vienna, Austria). A cross-sectional area of dystrophin-positive muscle fibers was quantified using ImageJ software.
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6

Visualizing Viral Entry Dynamics

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Vero cells were cultured in DMEM with 10% FBS and 1% P/S in 6 wells of 20 mm-plates with glass bottoms, and the fluorescent VLPs were added into each well. After adding the fluorescent VLPs, the lipid raft of cell membrane was labeled with the Cholera Toxin B Subunit (Recombinant), Alexa Fluor® 594 Conjugate (Thermo Fisher Scientific, US) at 5, 10, 15, 20, 30, and 60 min. The labeling was for 10 min on ice and away from light. After washing with PBS, the cells were fixed with 4% paraformaldehyde for 40 min and washed again with PBS. Then the cell nucleus was labeled with Hoechst33342 (Beyotime, China) at room temperature for 10 min and washed with PBS. In the entry inhibition assays, the lipid raft inhibitor methyl-β-cyclodextrin (m-β-CD, Aladdin reagent) was diluted to a working concentration of 10 mM using the cell culture medium and pretreated Vero cells for 10 min at room temperature before being cultured with fluorescent VLPs. The images were taken under the PE Ultra VIEW VoX double disc living cell fluorescence confocal microscope. For experiments observing the entry of VLPs in time gradients, we randomly chose 5 views and counted the number of viruses absorbing on cell membrane and the number of cells entering into cells at different time points in the inhibitor treated group and the untreated group.
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7

Confocal Microscopy Analysis of Transfected Cells

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Confocal laser scanning microscopic observation was conducted as previously described [23 (link)]. In brief, 48 h after transfection, 293A cells were fixed with 4% paraformaldehyde for 15 min at room temperature. The cells were then treated with a fluorescent wheat germ agglutinin conjugate (WGA, Alexa Fluor® 594 conjugate; Thermo Fisher Scientific). After 0.02% (w/v) Triton-X100 treatment, the nuclei of the cells were visualized with TO-PRO-3 Iodide (Molecular Probes, Eugene, OR, USA). Stained cells were mounted with VECTASHIELD Mounting Medium (Vector Laboratories, Burlingame, CA, USA), after which fluorescence was detected using an FV10i Confocal Laser Scanning Microscope (Olympus, Tokyo, Japan).
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8

Assessing Pulmonary Endothelial Function in Explanted Lungs

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To assess function of the pulmonary endothelium in explanted human lungs, biopsies (4 mm) of the left and right pulmonary arteries and pulmonary veins were collected and placed in a 96-well plate (BD Falcon). Acetylated low-density lipoprotein (LDL) with fluorescent Alexa Fluor 594 conjugate (L35353; ThermoScientific) was diluted 1:200 in 1× DMEM/F12K cell culture media (Corning). Wells containing pulmonary vascular tissue biopsies from each lung received 150 μL media with acetylated LDL reagent, or media alone (negative control). The multi-well plate was covered with aluminum foil and incubated at 37°C with gentle shaking for 4 hours. After incubation, samples were washed five times with phosphate-buffered saline, fixed in cold phosphate-buffered 4% paraformaldehyde for 48 hours, embedded in paraffin, sectioned at 5 μm thickness, de-paraffinized, stained with DAPI, and imaged using a fluorescence microscope (FSX100; Olympus).
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9

Immunostaining of Epithelial Cell Layers

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Epithelial cell layers were washed 3× with PBS, then fixed with PFA 4% pH 7,5 and kept in 4°C with PBS for maximally 7 days prior to immunostaining. Cells were washed and stained following the protocol published previously (13 (link)) using the following primary antibodies: ZO-1 (1:100; BD Biosciences), JAM-A (1:100; Thermo Fisher). The secondary antibodies used were Alexa Fluor 488 goat anti-mouse or rabbit IgG, and Alexa Fluor 594 goat anti-mouse or rabbit IgG (1:500; Thermo Fisher). To determine occludin expression and cellular distribution, an occludin mouse monoclonal antibody (OC-3F10) was used as an Alexa Fluor® 594 Conjugate (Thermo Fisher). Nuclei were stained using DAPI (4′,6-Diamidin-2-phenylindol, conc. 1:2000). Immunofluorescence staining was analyzed by confocal laser scanning microscopy (LSM 780, Carl Zeiss, Jena).
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10

Immunofluorescence Staining of hPSCs

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Following BMP4/CHIR99021 gradient exposure and fixation, WTC-11 hPSCs from a given experiment were (in parallel) permeabilized with 0.1% Triton X-100 (VWR, Cat# 97062-208) in PBS for 10 min at RT, and blocked with 1% bovine serum albumin (BSA; Sigma-Aldrich, Cat# A7906) in PBS containing 0.1% Tween-20 (PBST, VWR, Cat# 97062-332). Cells were incubated overnight at 4 °C with primary antibodies against Brachyury (raised in goat, 13 μg/mL; R&D Systems, Cat# AF2085), CDX2 (raised in rabbit, 1:90 dilution; Abcam, Cat# ab76541), and Sox2 (raised in mouse, 25 μg/mL; Novus Biologicals, Cat# MAB2018) in 1% BSA-PBST. Secondary antibodies (donkey anti-goat Alexa Fluor 488 conjugate, ThermoFisher, Cat# A-11055; donkey anti-rabbit Alexa Fluor 647 conjugate, ThermoFisher, Cat# A-31573; and donkey anti-mouse Alexa Fluor 594 conjugate, ThermoFisher, Cat# A-21203) were applied for 1 hr at RT with a Hoechst 33342 (10 μg/mL, ThermoFisher, Cat# H3570) counterstain. All staining steps were performed in parallel for a given experiment using the same stock and working solutions. Cells were rinsed in PBS and imaged using a Nikon Ti-E inverted microscope.
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