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Axiovert fluorescent microscope

Manufactured by Zeiss
Sourced in Germany

The Axiovert fluorescent microscope is a laboratory equipment designed for high-resolution imaging of fluorescently-labeled samples. It provides a versatile platform for a wide range of applications, including cell biology, neuroscience, and materials science research. The Axiovert microscope utilizes advanced optics and illumination systems to enable detailed observation and analysis of fluorescent specimens.

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45 protocols using axiovert fluorescent microscope

1

Neural Stem Cell Sphere Assay

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Neurosphere assay was performed following a previously published protocol [23]. DG from each group of mice was collected and dissociated using the mixture of the enzymes containing 0.8 U/ml dispase (Stem cell, 07923), 2.85 U/ml papain (Worthington, LK003176) and 250 U/ml DNase (Stem cell, 07900) for 30 min at 37°C. Dissociated cells were plated in fresh DMEM/F12 with 100 ng/ml basic fibroblast growth factor and epidermal growth factor at a density of 1 × 104 cells per well of 96-well plate. Culture medium was added every 2 days during the entire culture period. To determine the NSC activity, the number and size of the spheres were determined 7 days after plating. Image of neurospheres were recorded using a digital camera attached to an Axiovert fluorescent microscope (Carl Zeiss) at a 20× magnification. Four images were randomly acquired from each plate, and the diameter of the neurospheres in these images was measured with a minimum cutoff diameter of 20 μm using the Image J software.
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2

Cell Spreading on ECM Coated Surfaces

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HB2 and HB2 FGFR2(-) cells were seeded into fresh 60-mm cell culture dishes the day before an assay. Coverslips were coated with 100 µg/ml of freshly prepared Matrigel® Basement Membrane Matrix, rat tail Collagen type I or Fibronectin overnight at 4ºC. Coated coverslips were washed with PBS and blocked with 1 mg/ml BSA for 30 min. Next, cells were detached with enzyme-free cell dissociation buffer EDTA-based, seeded onto coated coverslips in 12-well plate and allowed to attach and spread for 90 min at 37ºC. After washing with PBS, cells were fixed in 4% paraformaldehyde (PFA) at RT, permeabilised with 0.1% Triton X-100 at 4 °C and mounted with Vectashield® HardSet™ Antifade Mounting Medium with Phalloidin (Vector Laboratories). The extent of cell spreading was quantified as an area of phalloidin signal per cell using ImageJ software. Representative images were taken using ZEISS AxioVert fluorescent microscope.
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3

Autophagy Visualization with GFP-RFP-LC3

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Cells were transfected with a plasmid to express a green fluorescent protein (GFP) and red fluorescent protein (RFP) tagged form of LC3 (ATG8). For analysis of cells transfected with the GFP-RFP-LC3 construct, the GFP/RFP-positive vesicularized cells were examined under the X40 objective of a Zeiss Axiovert fluorescent microscope.
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4

Autophagy Monitoring via GFP-RFP-LC3

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Cells were transfected with a plasmid to express a green fluorescent protein (GFP) and red fluorescent protein (RFP) tagged form of LC3 (ATG8). For analysis of cells transfected with the GFP-RFP-LC3 construct, the GFP/RFP -positive vesicularized cells were examined under the X40 objective of a Zeiss Axiovert fluorescent microscope.
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5

Visualizing and Analyzing Polarized Cells

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Zeiss Axiovert fluorescent microscope equipped with an AxioCam MRm digital camera was used to visualize fluorescent and differential interference contrast microscopy (DIC) images. Axiovision (version 4.0) was used to capture the images that were further processed by Adobe Photoshop CS4 software. Percentage of the polarized cells was determined as described [13] (link).
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6

Immunofluorescence Staining of FLAG-tagged Proteins

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Cells were grown on glass coverslips and fixed with flash treatment of ice-cold methanol before permeabilization with 0.25% Triton X-100 in phosphate-buffered saline for 5 min at room temperature. Slides were incubated with mouse monoclonal anti-FLAG M2 antibody (1:500; F1804; Sigma) for 2 h at 37 °C, followed by incubation with the appropriate secondary antibody coupled to Alexa-488 (1:1000; Jackson ImmunoResearch Laboratories Inc., West Grove, PA, USA). All cells were co-stained with Hoechst (33342; Invitrogen). Cells were mounted using Mowiol mounting medium and examined by fluorescence microscopy using an Axiovert fluorescent microscope (Zeiss).
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7

Cell Viability Assessment of 3D Hydrogels

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Cell viability was determined immediately after forming the gels and following 6 days of culture. First, the media was aspirated and the gels were rinsed with PBS. Next, 500 μL of the staining dye containing 2 μM calcein AM, 4 μM ethidium homodimer-1, and 1 μg/mL Hoechst 33342 was added to the well and incubated for 20 min on a rotator at 37°C. Three gels were made for each cell density and 5 images were obtained per gel at 5x on a Zeiss Axiovert fluorescent microscope. Viability was determined by calculating the percentage of cells stained with calcein AM in each image with the ImageJ cell counter36 (link).
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8

Live Cell Imaging of Autophagy

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Cells were transfected with a plasmid to express a green fluorescent protein (GFP) and red fluorescent protein (RFP) tagged form of LC3 (ATG8). For analysis of cells transfected with the GFP-RFP-LC3 construct, the GFP/RFP-positive vesicularized cells were examined under the ×40 objective of a Zeiss Axiovert fluorescent microscope.
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9

Visualizing Autophagy with GFP-LC3

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Cells were transfected with a plasmid to express a green fluorescent protein (GFP) tagged form of LC3 (ATG8). For analysis of cells transfected with the GFP-LC3 construct, the GFP-LC3 - positive vesicularized cells were examined under the X40 objective of a Zeiss Axiovert fluorescent microscope.
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10

Polymer-Mediated Efficient Cellular Uptake and Endosomal Release of siRNA

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Example 17

This example demonstrates that polymer PRx0729v6 can mediate a more efficient cellular uptake of fluorescent-labeled siRNA and endosomal release than a lipid-based transfection reagent.

HeLa cells were plated on a Lab-Tek II chambered coverglass. Following overnight incubation, cells were transfected with either 100 nM FAM-siRNA/lipofectamine 2000 or with 100 nM FAM-siRNA at a Polymer-siRNA 4:1 charge ratio. Complexes were formed in PBS pH 7.4 for 30 minutes at a 5× concentration, added to cells for final 1× concentration, and incubated overnight. Cells were stained with DAPI (for visualization of the nucleus) for 10 minutes and then fixed in 3.7% formaldehyde-1×PBS for 5 minutes and washed with PBS. Samples were imaged with a Zeiss Axiovert fluorescent microscope. FIG. 10B shows the fluorescence microscopy of cell uptake and intracellular distribution of polymer-siRNA compared to lipofectamine (FIG. 10A). Particulate staining of lipofectamine-siRNA complexes suggest an endosomal location, while diffuse cytoplasmic staining of polymer-siRNA complexes indicate they have been released from endosomes into the cytoplasm.

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