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10 protocols using anti fbxw7

1

Western Blot Analysis of FBXW7 Protein

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Cells were washed twice with Hanks’ balanced salt solution and lysed in RIPA lysis buffer (50 mM Tirs-Cl, pH 7.4, 120 mM NaCl, 1% NP-40, 0.2% SDS, 1 mM EDTA and complete protease inhibitor), and centrifuged for 20 min at 13,000g, 4 °C. The protein concentrations were subsequently determined using a BCA Protein Assay Kit (Beyotime, China) according to the manufacturer’s instructions. Protein samples (20 µg) were denatured with 4× loading buffer (TAKARA) at 95 °C for 5 min. The polyvinylidene difluoride (PVDF; Life Technologies) membrane was blocked with phosphate-buffered saline (PBS) supplemented with 5% non-fat milk. Equal quantities of protein were subjected to SDS-PAGE and gels were transferred onto PVDF membranes. The PVDF membrane was then incubated with the following anti-bodies: Anti-FBXW7 (1:500; Abcam) and anti-β-actin (1:2000; Cell Signaling Technology), at 4 °C overnight. The PVDF membrane was washed three times with PBS containing 5% Tween (Sigma-Aldrich), and incubated with horseradish peroxidase-conjugated rabbit anti-mouse secondary antibody at room temperature for 2 h. An ECL kit was used to visualize the protein bands according to the manufacturer’s instructions. The relative protein expression levels were analyzed using Image-ProPlus 6.0 software (Media Cybernetics, Inc., Rockville, MD, USA).
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2

BCA Assay and Western Blot Analysis

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The protein concentration was measured using a bicinchoninic acid (BCA) assay (#23225; Pierce, USA) according to the manufacturer’s instructions. The primary antibodies used in this study are as followed: anti-KDM5B (1:500, Cell Signaling Technology, #15327), anti-H3K4me3 (1:1000, Cell Signaling Technology, #9751), anti-H3 (1:1000, Cell Signaling Technology, #4499), anti-CCNE1 (1:1000, Cell Signaling Technology, #20808), anti-CCNE2 (1:1000, ProteinTech, 11935-1-AP), anti-CDK2 (1:1000, ProteinTech, 10122-1-AP), anti-FLAG (1:1000, Cell Signaling Technology, #8146), anti-FBXW7 (1:1000, Abcam, ab109617), anti-FLI1 (1:1000, Abcam, ab133485), and β-actin (1:5000, Cell Signaling Technology, #4970). The secondary antibodies are goat anti‐rabbit immunoglobulin G (1:2000, Abcam, ab7090) and goat anti‐mouse immunoglobulin G (1:2000, Abcam, ab97040). The unprocessed western blot images were shown in Supplementary Fig. S2.
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3

Optimized Western Blotting Technique

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Western blots (Wb) were performed as previously described [8 (link)]. The primary antibodies used were as follows: Anti-GAPDH (Cat. No. ab181602, Abcam, Cambridge, UK), anti-FBXW7 (Cat. No. ab109617, Abcam, Cambridge, UK), anti-beta-actin (Cat. No. ab8226, Abcam), anti-AR (Cat.no. ab133273) and anti-GATA2 (Cat. No. sc-515178, Santa Cruz Biotechnology, Dallas, TX, USA). The horseradish peroxidase (HRP)-conjugated secondary antibodies used were as follows: Anti-rabbit (Cat. No. NA934, Amersham, Buckinghamshire, UK), anti-mouse (Cat. No. 170-501, Bio-RAD, Hercules, CA, USA) and anti-goat (Cat. No. P0160, DAKO, Glostrup, Denmark).
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4

Molecular Signaling Pathway Analyses

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The Escherichia coli 0111: B4 LPS, N-hexanoyl-D-sphingosine (C6-ceramide) and zVAD-FMK were obtained from Sigma-Aldrich (St. Louis, MO, USA). DAPK1 inhibitor and ST2825 were purchased from Medchem Express (Monmouth Junction, New Jersey, USA). Recombinant GST-DAPK1 fusion protein was obtained from Millipore (Billerica, MA). Caspase-3 activity detection kit was from Bestbio (Shanghai, China). Quantikine human IL-6 ELISA kit was from R&D Systems (Minneapolis, MN). Annexin V-FITC apoptosis detection kit was ordered from Beyotime (Nanjing, China). The following antibodies with the company and concentration were used for coimmunoprecipitation (co-IP) or western-blotting analyses: anti-Pellino1 (Abcam, 1:500), anti-MyD88 (Cell Signaling Technology, 1:500), anti-caspase-8 (Cell Signaling Technology, 1:500), anti-TRIF (Cell Signaling Technology, 1:1000), anti-RIP1 (BD Biosciences, 1:2000), anti-Flag (ProteinTech group, 1:1000), anti-phospho-DAPK1 (Sigma-Aldrich, 1:1000), anti-DAPK1 (Cell Signaling Technology, 1:1000), anti-Fbxw7 (Abcam, 1:1000), anti-pSer (Santa Cruz, 1:1000), anti-Fn14 (Cell Signaling Technology, 1:2000) and anti-GAPDH (Biosynthesis, 1:3000).
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5

Western Blot Analysis of Protein Targets

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Total protein was extracted, separated by 12% SDS-PAGE, and subsequently transferred to polyvinylidene fluoride (PVDF) membranes (Millipore). Membranes were blocked with 5% skim milk at room temperature for 1 h and subsequently incubated with the primary antibody anti-FBXW7 (1:1,000, Abcam, USA), anti-FLAG antibody (1:1,000, Affinity, USA), anti-USP28 antibody (1:1,000, Affinity, USA), anti-c-Myc antibody (1:1,000, Cell Signaling Technology, USA), or anti-glyceraldehyde 3-phosphate dehydrogenase (GAPDH) antibody (1:1,000, Affinity, USA). A secondary antibody (Cell Signaling Technology) was used and detected by chemiluminescence.
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6

Western Blot Analysis of Protein Targets

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WB analysis was performed according to the protocol of a standard method. Primary antibodies used for WB analysis were anti-RFC4 (Abcam, Cambridge, MA, ab156780, 1:1000), anti-Notch1 (Cell Signaling, Danvers, MA, 3608, 1:500), anti-NICD1 (Abcam, Cambridge, MA, ab8925, 1:500), anti-p-Ser (Abcam, Cambridge, MA, ab9332, 1:500), anti-p-Thr (Cell Signaling, Danvers, MA, 9381s, 1:500), anti-CDK8 (Abcam, Cambridge, MA, ab224828, 1:1000), anti-FBXW7 (Abcam, Cambridge, MA, ab109617, 1:1000), anti-cyclin C (Abcam, Cambridge, MA, ab85927, 1:1000), anti-RFC2 (Abcam, Cambridge, MA, ab174271, 1:1000), anti-RFC5 (Abcam, Cambridge, MA, ab79871, 1:200), anti-GSK-3β (Abcam, Cambridge, MA, ab32391, 1:1000), anti-MEKK1(Abcam, Cambridge, MA, ab212601, 1:1000), anti-FLAG (Sigma, Saint Louis, MO, USA, F7425, 1:2000), anti-HA (Sigma, Saint Louis, MO, USA, H6908, 1:2000), anti-MYC (Cell Signaling, Danvers, MA, 2278, 1:2000), anti-His antibodies (Abcam, Cambridge, MA, ab9108, 1:2000). Blotted membranes were stripped and re-blotted with anti-p84 (Abcam, Cambridge, MA, ab131268, 1:2000) and anti-β-actin (Sigma, Saint Louis, MO, USA, A2228 1:2000), used as loading controls.
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7

Molecular Mechanisms in Cancer Therapy

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N6-isopentenyladenosine (IPA), N6-benzyladenosine (N6-BA), 5-fluorouracil (5-FU), temozolomide (TMZ), and decitabine (5-Aza-2′-deoxycytidine or 5-AZA-dC) were purchased from Sigma-Aldrich (St. Louis, MO, United States) and dissolved in sterile DMSO.
The following primary antibodies were purchased from Cell Signaling Technology (Beverly, MA, United States): anti-GAPDH monoclonal; anti-Mcl-1; and anti-Phospho-Histone H2Ax (Ser139); anti-SREBP-1 was purchased from Santa Cruz Biotechnology (Dallas, TX, United States). The following primary antibodies were purchased from Abcam (Cambridge, United Kingdom): anti-FBXW7; anti-FDPS; anti-MGMT; anti-DNMT1; anti-histone H3, H3K27me3, and H3Ac (pan-acetyl K9 + K14 + K18 + K23 + K27). Anti-phospho-c-Myc (Thr58) was purchased from Thermo Fisher Scientific (Waltham, MA, United States). The goat anti-rabbit secondary antibody and goat anti-mouse secondary antibody were purchased from Abcam.
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8

Immunoblotting Analysis of Cell Signaling

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Whole cell lysates were prepared in RIPA buffer containing protease inhibitor cocktail (Thermo Fisher Scientific, Waltham, MA, USA). Immunoblotting was performed with anti-MUC1-C (16564, 1:1000 dilution; Cell Signaling Technology (CST), Danvers, MA, USA), anti-STAT1 (9172S, 1:1000 dilution; CST), anti-IRF1 (#8478S, 1:1000 dilution; CST), anti-IFNGR1 (34808, 1:1000; CST), anti-GAPDH (#5174S, 1:1000 dilution; CST) and anti-β-actin (A5441; 1:100000 dilution; Sigma, St. Louis, MO, USA), anti-FBXW7 (ab109617, 1:1000; abcam, Cambridge, MA, USA), anti-MTA1 (5647, 1:1000; CST), anti-MBD3 (14540, 1:1000; CST), anti-IDO1 (86630, 1:1000; CST), anti-WARS (GTX110223, 40037, 1:1000; Gene Tex), anti-PTGES (ab180589, 1:1000; abcam), anti-PBRM1(A301-591A, 1:10000; Bethyl Laboratories, Montgomery, TX, USA), anti-ARID1A (12354, 1:500; CST), anti-ISG15 (sc166755, 1:2000; Santa Cruz Biotechnology, Santa Cruz, CA, USA), anti-SERPINB9 (PA5-51038, 1:2000; Invitrogen, Waltham, MA, USA).
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9

Western Blotting of FBXW7 Protein

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Treated cells were harvested and lysed with Nonidet P-40 (NP-40) buffer (Beyotime) in the presence of 1 mM phenylmethanesulfonyl fluoride (Beyotime). After the cells were spun at 12,000 rpm for 10 min in a 4°C precooled centrifuge, the supernatant was collected for western blot analysis. Proteins were separated on an 8% SDS-PAGE gel and then transferred to a polyvinylidene fluoride (PVDF) membrane (Thermo). After being locked with 5% (w/v) BSA (Sigma) in TBS-T (0.1% Tween 20 in 1× TBS) buffer for 1 h at room temperature, the membrane was incubated with primary antibodies at 4°C overnight. The following antibodies were used: anti-FBXW7 (1:1,000; Abcam) and anti-GAPDH (1:2,000; Cell Signaling). After three washes in TBS-T for 5 min each, the membranes were incubated with secondary antibody at room temperature for 1 h, then washed three times and stained following the kit manufacturer’s recommendation. ImageJ was used to quantify the band intensities.
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10

Quantification and Analysis of Protein Levels

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Cultured GC cells were collected and washed three times with PBS, and then, RIPA buffer containing protease inhibitor (Thermo Scientific, USA) was added to the cells according to the number of cells. The cell lysates were dissolved on ice for 30 minutes and then ultrasonically crushed and quantified by using BCA assays. The proteins were separated by sodium dodecyl sulfate-polyacrylamide gels (SDS-PAGE) and transferred to polyvinylidene fluoride (PVDF) membranes (Millipore, USA). Next, the membranes were blocked with 5% nonfat milk for 2 h, and the primary antibodies were incubated on a shaker in a refrigerator at 4°C overnight. Then, the membranes were washed with TBST, and HRP-conjugated secondary antibodies were added for 1-1.5 h at room temperature. The target proteins were detected with a Bio-Rad ChemiDoc XRS System. Densitometric analysis was performed by using Bio-Rad Image Lab software. The primary antibodies and dilution multiples involved in this study were as follows: anti-FBXW7 (1 : 1000, Abcam, USA), anti-BGN (1 : 1000, CST, USA), anti-HMGB1 (1 : 1000, Proteintech, USA), anti-H3 (1 : 1000, CST, USA), and anti-GAPDH (1 : 5000, Santa Cruz, CA). The secondary antibodies were diluted at 1 : 5000.
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