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2 protocols using anti rabbit igg 2729

1

Chromatin Immunoprecipitation (ChIP) Protocol

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Cells were fixed with 1% formaldehyde for 15 min in room temperature and quenched with 0.125 M glycine for 5 minutes in room temperature. ChIP assays was performed using a commercially available kit (ChIP-IT Express, Active Motif). Briefly, cell pellet was lysed to isolate chromatin using lysis buffer, followed by disruption with a Dounce homogenizer. LAM 621–101 cells chromatin was sheared enzymatically for 10 minutes at 37 C (ChIP-IT Express Enzymatic° Shearing Kit, Active Motif). Immunoprecipitation was performed using anti-cMyc (9402, Cell Signaling) or anti-Rabbit IgG (2729, Cell Signaling) antibodies. Complexes were washed, eluted from the beads with elution buffer containing SDS buffer, and followed by RNase and proteinase K treatment. Crosslinks were reversed by incubation overnight at 65°C, and ChIP DNA was purified with a Chromatin IP DNA purification kit (Active Motif) and qPCR was performed with SYBR Green master mix on a Step One Real-Time PCR system (all Life Technologies) using the primer sets for MAP2K1, CCNB1, CDK4, RPL4, and RPL35 listed in Table S3 (Barrilleaux et al., 2013 (link); Ciribilli and Borlak, 2017 ; Menssen and Hermeking, 2002 (link)).
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2

Transcription Factor Profiling Protocol

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Anti-BMAL1 (ab3350), anti-H3K27ac (ab4729), anti-H3K4me3 (ab8580), anti-H3K9me3 (ab8898) and anti-GAPDH (ab8245) antibodies were purchased from Abcam (Cambridge, UK). Anti-REV-ERBα (14506-1-AP), anti-DBP (12662-1-AP), anti-SLC1A5 (20350-1-AP), and anti-Histone H3 (17168-1-AP) antibodies were purchased from Proteintech (Wuhan, China). Anti-PPAR-γ (2443), anti-H3K9ac (9649), anti-H3K9me2 (4658), anti-H3K27me3 (9733) and anti-rabbit IgG (2729) were purchased from Cell Signaling Technology (Danvers, MA). Glutamine, methionine, C646 and MM-102 were purchased from Tsbiochem (Shanghai, China). [13C5]-glutamine and [2H3]-methionine were purchased from Zzbio (Shanghai, China). Dexamethasone was purchased from Sigma-Aldrich (St. Louis, MO). RNAiso Plus reagent, PrimeScript RT Master Mix and ChamQ Universal SYBR qPCR Master Mix were purchased from Vazyme (Nanjing, China). Beetle luciferin was purchased from Promega (Madison, WI). siRNAs for Slc1a5 and Ppar-γ, and negative control were purchase from IGE Biotechnology (Guangzhou, China). pcDNA 3.1, pcDNA 3.1-Ppar-γ, pcDNA 3.1-Slc1a5, pRL-TK, pGL4.0 and Slc1a5 luciferase reporters (-1400/+100 bp, -1000/+100 bp and a PPRE-mutated version) were obtained from Kaile Technologies (Guangzhou, China).
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