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Rna isolation reagent

Manufactured by Thermo Fisher Scientific
Sourced in United States

The RNA Isolation Reagent is a solution designed for the extraction and purification of ribonucleic acid (RNA) from various biological samples. It is a key component in the process of isolating RNA for downstream applications such as reverse transcription and gene expression analysis.

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5 protocols using rna isolation reagent

1

Quantitative Real-Time PCR for mRNA Analysis

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Total RNAs were extracted from different tissues using RNA Isolation Reagent (Invitrogen, Carlsbad, CA) and reversely transcribed to produce cDNA (Fermentas, EU). Relative expression of messenger RNA (mRNA) species was determined by Real Time PCR with Faststart Universal SYBR Green PCR Master (Roche Diagnostics, USA) by ABI7300. The primer sequences were shown in Additional file 1: Table S1. Relative mRNA levels were normalized with β-actin, and results were expressed as fold amplification.
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2

RNA Isolation from Dorsal Skin Tissue

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In 0.5 mL TRIzol reagent (RNA Isolation Reagent, Invitrogen—ThermoFisher Products & Kits, Amresco, LLC-Solon, Waltham, MA, USA), 50 mg of dorsal skin tissue was homogenized using an ultrasonic homogenizer (Sonics-Vibracell, Sonics and Materials Inc., Newtown, Fairfield County, CT, USA). According to the guidelines of the producer, total RNA was extracted from dorsal skin tissues, and the concentration of RNA yield and purity were calculated [48 (link)].
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3

Quantitative Real-Time PCR Analysis

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Total RNA of cells was extracted using RNA isolation reagent (Invitrogen, USA) and then was reverse-transcribed using One Step RT-qPCR Kit (Sangon Biotech, China) according to the manufacturer's protocol. Next, equal amounts of cDNA were used for RT-qPCR. PCR reaction and real-time detection were performed using iQ5 Real-time Quantitative PCR (Bio-Rad, USA). As shown in Table 1, the appropriate forward and reverse real-time PCR primers were used for GAPDH, VEGF, Bcl-2, BAX, LC3B, Caspase 3, mTOR, and Beclin-1. The real-time PCR cycles included predenaturation at 95°C for 5 min, 40 cycles of denaturation at 95°C for 20 sec, annealing at 60°C for 30 sec, and extension at 72°C for 30 sec. 2−ΔΔCt (ΔΔCt = (CmRNA–CtGAPDH) − (control − CtGAPDH)) was used to quantify the relative expression of target mRNA.
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4

RNA Isolation from Tissue Samples

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A tissue sample weighing 50 mg was subjected to homogenization using an ultrasonic homogenizer (Sonics-Vibracell, Sonics and Materials Inc., Newtown, Fairfield County, Connecticut, USA). The homogenization was carried out in 0.5 mL of TRIzol reagent (RNA Isolation Reagent, Invitrogen—ThermoFisher Products & Kits, Amresco, LLC-Solon, USA) [44 (link)]. Tissue samples were subjected to total RNA isolation following the prescribed protocol provided by the manufacturer. The estimation of RNA yield and purity concentrations was performed [51 (link)].
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5

RNA Isolation and qRT-PCR Analysis

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RNA acquisition as well as cDNA synthesis was performed in RNA isolation reagent (Invitrogen, Carlsbad, CA, USA) and cDNA synthesis kit (Promega, Madison, WI, USA), respectively. The detail qRT-PCR instruction was described in our previous study [61 (link)]. Information of the primers used is summarized in Table 3. U6 or GAPDH was used as the internal reference to normalize miRNA and total mRNA level. Finally, the relative quantitative method of 2−ΔΔCt was applied to calculate the levels of genes under test.
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