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Amicon filter columns

Manufactured by Merck Group
Sourced in Germany

Amicon filter columns are a type of laboratory equipment used for the separation and concentration of macromolecules, such as proteins, DNA, and other biomolecules, from complex mixtures. These columns utilize a semi-permeable membrane to selectively allow the passage of smaller molecules while retaining the larger molecules of interest.

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8 protocols using amicon filter columns

1

Nanobody-Tub-tag Protein Expression

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Example 14

Nanobody-Tub-tag fusion proteins were expressed in E. coli (JM109). Cells were induced with 0.5 mM IPTG and incubated at 18° C. for 18 h. Lysis was performed in presence of Lysozyme (100 μg/ml), DNAse (25 μg/ml) and PMSF (2 mM) followed by sonication (Branson® Sonifier; 16×8 sec, 20% Amplitude) and debris centrifugation at 20.000 g for 30 min. The protein was purified with an Äkta FPLC system using a 5 mL His-Trap (GE Healthcare, USA) column, peak fractions were concentrated to 2 ml using Amicon filter columns (cut-off 3 kDa; (Merck Millipore, Germany) and subjected to size exclusion chromatography using a Superdex 75 column (GE Healthcare, USA). Peak fractions were pooled and protein aliquots were shock-frozen and stored at −80° C.

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2

Nanobody-Tub-tag Protein Expression and Purification

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Example 14

Nanobody-Tub-tag fusion proteins were expressed in E. coli (JM109). Cells were induced with 0.5 mM IPTG and incubated at 18° C. for 18 h. Lysis was performed in presence of Lysozyme (100 μg/ml), DNAse (25 μg/ml) and PMSF (2 mM) followed by sonication (Branson® Sonifier; 16×8 sec, 20% Amplitude) and debris centrifugation at 20.000 g for 30 min. The protein was purified with an Äkta FPLC system using a 5 mL His-Trap (GE Healthcare, USA) column, peak fractions were concentrated to 2 ml using Amicon filter columns (cut-off 3 kDa; (Merck Millipore, Germany) and subjected to size exclusion chromatography using a Superdex 75 column (GE Healthcare, USA). Peak fractions were pooled and protein aliquots were shock-frozen and stored at −80° C.

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3

Production and Labeling of GFP Nanobody

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GFP-specific nanobody39 (link) expression was performed in E. coli (JM109). Expression was induced with 0.5 mM of isopropyl beta-D-1-thiogalactopyranoside (IPTG, ROTH), and cells were incubated at 37 °C for 24 h. Cells were lysed in the presence of Lysozyme (100 μg ml−1; Serva, Germany), DNase (25 μg ml−1; Applichem, Germany) and phenylmethanesulfonyl fluoride (2 mM, PMSF, Sigma) followed by sonication (Branson® Sonifier; 16 × 8 sec, 20% Amplitude) and debris centrifugation at 20000 x g for 30 min. Protein purification was performed with an Äkta FPLC system (GE Healthcare, USA) using a 5 mL His-Trap column (GE Healthcare, USA); peak fractions were concentrated to 2 ml using Amicon filter columns (cut-off 10 kDa, Merck Millipore, Germany) followed by size exclusion chromatography using a Superdex 75 column (GE Healthcare, USA). Peak fractions were pooled and protein aliquots were shock-frozen and stored at −80 °C. 1 mg purified nanobody protein was then labeled with ATTO 647N (ATTO-TEC, Germany) with a theoretical DOL (degree of labeling) of 3, according to the manufacturers’ instructions. Unbound dye was removed by gel filtration in PD10 columns (GE Healthcare, USA). The final ATTO 647N labelled GFP-specific chromobody was obtained and preserved in PBS in the concentration of 1 mg ml−1.
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4

Purification of Nanobody-Tub-tag Fusion Proteins

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Example 14

Nanobody-Tub-tag fusion proteins were expressed in E. coli (JM109). Cells were induced with 0.5 mM IPTG and incubated at 18° C. for 18 h. Lysis was performed in presence of Lysozyme (100 μg/ml), DNAse (25 μg/ml) and PMSF (2 mM) followed by sonication (Branson® Sonifier; 16×8 sec, 20% Amplitude) and debris centrifugation at 20.000 g for 30 min. The protein was purified with an Äkta FPLC system using a 5 mL His-Trap (GE Healthcare, USA) column, peak fractions were concentrated to 2 ml using Amicon filter columns (cut-off 3 kDa; (Merck Millipore, Germany) and subjected to size exclusion chromatography using a Superdex 75 column (GE Healthcare, USA). Peak fractions were pooled and protein aliquots were shock-frozen and stored at −80° C.

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5

Nanobody-Tub-tag Protein Expression

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Example 7

Nanobody-Tub-tag fusion proteins were expressed in E. coli (JM109). Cells were induced with 0.5 mM IPTG and incubated at 18° C. for 18 h. Lysis was performed in presence of Lysozyme (100 μg/ml), DNAse (25 μg/ml) and PMSF (2 mM) followed by sonification (Branson® Sonifier; 16×8 sec, 20% Amplitude) and debris centrifugation at 20.000 g for 30 min. The protein was purified with an Äkta FPLC system using a 5 ml His-Trap (GE Healthcare) column, peak fractions were concentrated to 2 ml using Amicon filter columns (Cut-off 3 kDa; (Millipore)) and subjected to size exclusion chromatography using a Superdex 75 column (GE Healthcare). Peak fractions were pooled and protein aliquots were shock-frozen and stored at −80° C. at 0.5 g/l. Note: Tub-tag is shown in SEQ ID No. 3.

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6

Recombinant GspDLC Protein Expression

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Recombinant E. coli colonies were obtained by culture in selective LB-Amp plates (100 µg/mL) at 37 °C overnight and screened by PCR. Recombinants carrying the appropriate insert were sub-cultured in LB-Amp broth (100 µg/mL), shaking at 200 rpm and 18 °C until they reached an OD600 of 0.5. The cultures were then induced with 1 mM IPTG, incubating overnight for the expression of the rGspDLC protein. Cells were centrifuged at 6000× g for 3 min at 4 °C, and the lysis of the pellet was performed with the BugBuster reactive (Novagen™, San Diego, CA, USA), as the manufacturer’s instructions. The cell lysis reactive was mixed with 0.5 mM PMSF (Affimetrix™, Santa Clara, CA, USA) as proteases inhibitor and bovine pancreatic DNAse-I (Sigma™). The rGspDLC-His-tagged protein was detected in the E. coli cells extracts by Western blot assays and later purified by nickel affinity chromatography in Ni-NTA Superflow nickel charged columns (Qiagen™) with sodium phosphate and urea elution buffer, as specified by the manufacturer. The recombinant protein was concentrated by size exclusion using 30 kDa Amicon filter columns (Millipore™, San Louis, MO, USA) and centrifugation at 4000× g.
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7

Nanobody-Tub-tag Fusion Protein Expression

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Example 7

Nanobody-Tub-tag fusion proteins were expressed in E. coli (JM109). Cells were induced with 0.5 mM IPTG and incubated at 18° C. for 18 h. Lysis was performed in presence of Lysozyme (100 μg/ml), DNAse (25 μg/ml) and PMSF (2 mM) followed by sonification (Branson® Sonifier; 16×8 sec, 20% Amplitude) and debris centrifugation at 20.000 g for 30 min. The protein was purified with an Äkta FPLC system using a 5 ml His-Trap (GE Healthcare) column, peak fractions were concentrated to 2 ml using Amicon filter columns (Cut-off 3 kDa; (Millipore)) and subjected to size exclusion chromatography using a Superdex 75 column (GE Healthcare). Peak fractions were pooled and protein aliquots were shock-frozen and stored at −80° C. at 0.5 g/l. Note: Tub-tag is shown in SEQ ID No. 3.

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8

Nanobody-Tub-tag Protein Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols

Example 7

Nanobody-Tub-tag fusion proteins were expressed in E. coli(JM109). Cells were induced with 0.5 mM IPTG and incubated at 18° C. for 18 h. Lysis was performed in presence of Lysozyme (100 μg/ml), DNAse (25 μg/ml) and PMSF (2 mM) followed by sonification (Branson® Sonifier; 16×8 sec, 20% Amplitude) and debris centrifugation at 20.000 g for 30 min. The protein was purified with an Äkta FPLC system using a 5 ml His-Trap (GE Healthcare) column, peak fractions were concentrated to 2 ml using Amicon filter columns (Cut-off 3 kDa; (Millipore)) and subjected to size exclusion chromatography using a Superdex 75 column (GE Healthcare). Peak fractions were pooled and protein aliquots were shock-frozen and stored at −80° C. at 0.5 g/l. Note: Tub-tag is shown in SEQ ID No. 3.

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