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6 protocols using ab24479

1

Immunohistochemical Analysis of COX-2 and Survivin

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Sections from formalin-fixed, paraffin-embedded tumor tissues (4-µm thick) were immunostained and assayed using a PV6000 polymer system (ZSGB-BIO, Beijing, China). All paraffin sections were heated to 90°C for 20 min. Following routine deparaffinization by serial baths in xylene 3 times and dehydration in a graded series of ethanol (100, 95 and 80%) and distilled water, each section was treated with 0.3% hydrogen peroxide to block endogenous peroxidase activity. Sections were subsequently washed in 0.01 M phosphate-buffered saline (PBS; pH 7.4), microwaved at 100°C for 20 min for antigen retrieval and then incubated overnight at 4°C with optimal dilutions of primary antibodies. Antibodies used were anti-COX-2 rabbit polyclonal antibody (dilution, 1:400; ab15191; Abcam, Cambridge, UK) and anti-survivin rabbit polyclonal antibody (dilution, 1:1,200; ab24479; Abcam). Following washing in PBS, the tissue sections were treated with secondary antibody, IgG-horseradish peroxidase polymer multimer (PV-6000; ZSGB-BIO, Beijing, China), at 37°C for 20 min. Finally, the tissue sections were incubated with diaminobenzidine and counterstained with hematoxylin, cleared and mounted on neutralbalsam. In order to confirm COX-2 and survivin immunospecificity, 0.01 M PBS was supplied instead of primary antibody, as the negative control.
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2

Immunohistochemical Analysis of IPF Lung Tissue

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ZytoChem-Plus AP Kit (Fast Red) (Zytomed Systems, Berlin, Germany) was used for immunohistochemical localization of research target-proteins in formalin-fixed, paraffin-embedded lung tissue sections from patients with sporadic IPF (n = 5) and organ donors (n = 5), according to the manufacturer´s instructions and previous published work [31 (link)]. In the following, the primary antibodies used for IHC are listed, including the sources and dilutions: rabbit polyclonal for human alpha-smooth muscle actin [α-SMA] (1:200, Abcam, ab5694), rabbit monoclonal for human cytokeratin-5 [KRT5] (1:200, Abcam, ab75869), rabbit polyclonal for human survivin (1:200, Abcam, ab24479), mouse monoclonal for human phospho-STAT3 [Y705] (1:25, Cell Signaling Technology, #4113S) and rabbit polyclonal for human HDAC4 (1:50, Santa Cruz, sc-11418). As control experiments, the first antibody was omitted on some sections during staining procedures. Immunostained lung sections were scanned with a scanning device (Nano-Zoomer, Hamamatsu), and examined histopathologically using the ´NDP.view2 software´ at 50×, 100×, 200× and 400× original magnification.
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3

Protein Extraction and Western Blot Analysis

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Total protein from cells was extracted by using RIPA buffer (50 mM TrisHCl, 150 mM NaCl, 2 mM EDTA, 1% NP-40, and 0.1% SDS). Total protein concentration was measured by using BCA protein assay (Pierce, Thermo Scientific) and then separated on 10% SDS PAGE gel and transferred onto nitrocellulose membranes for a conventional Western blot analysis. Antibodies used were Anti-UBE3A (1:2000, ab10488, Abcam), anti-p53 (1:1000, ab131442, Abcam), anti-p21 (1:2000, ab7960, Abcam), anti-survivin (1:1000, ab24479, Abcam), anti-Bax (1:1000, ab7977, Abcam), and anti-active caspase 3 (1:1000, ab2302, Abcam). GAPDH served as loading control and was detected by using ant-GAPDH (1:2500, ab9485, Abcam). Anti-Rabbit IgG (HRP) (1:10000, ab191866, Abcam) was used as a second antibody. Protein signals were detected using SuperSignal West Pico Chemiluminescent Substrate (Thermo Scientific).
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4

Immunohistochemistry for Tumor Markers

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Immunohistochemistry (IHC) was performed as described (13 (link)). Tumor sections were deparaffinized and antigen retrieval was performed prior to primary antibody incubation. Primary antibodies were anti-survivin (Abcam, ab24479), anti-STAT3 (Abcam, ab325015), and anti-Ki67 (Cell Marque, 275R-18).TUNEL staining was performed on paraffin sections using Apoptag Kit (Millipore, S71003).
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5

Selinexor-Induced Tumor Regression Analysis

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KT-10 tumors that regress rapidly after treatment with selinexor, were harvested 24 hours after a single dose of drug (10 mg/kg). Other, less responsive tumors, were harvested 2 hours after dose 6 (MWF dosing) at 10 mg/kg/dose. Tumors were processed for immunoblotting as previously described [30 (link)]. Immunoblots were probed for p53, p21, PARP and cleaved PARP and XPO1/CRM1. Three control and three treated tumors were analyzed for each xenograft line. GAPDH was used as a loading control. KT-10, KT-11, SK-NEP-1, CHLA258, Rh28 and Rh30 tumors were fixed in 10% buffered formalin and paraffin sections were analyzed by H&E as well with the following antibodies: FOXO1 (#2880, Cell Signaling), IKB (ab32518, Abcam), NFKB (sc-8008, Santa Cruz), pRb-phos (ab76298, Abcam), Mcl-1 (sc-819, Santa Cruz), β-catenin (#610154 BD), ERK-phos (ab32538, Abcam), survivin (ab24479, Abcam), and p53 (sc-126, Santa Cruz).
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6

Immunohistochemical Analysis of Survivin

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Resected tumor tissue was processed as previously described. 9 Immunohistochemical analysis was performed automatically on a Ventana BenchMark ULTRA using the iView 3,3′-diaminobenzidine detection kit (Ventana), according to the manufacturer's instructions. Survivin was detected with a rabbit antibody from Abcam (ab24479; survivin clone SP79) in a dilution of 1:100. Histological evaluation was performed on an Olympus BX51 microscope and documented by means of the analySIS software (Soft Imaging Systems GmbH).
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