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9 protocols using sc 651

1

Western Blot Analysis of Protein Samples

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25 μg of individual protein samples were mixed with an equal volume of 2x Laemmli buffer containing DTT and denatured at 90 °C for 10 min. The lysates were ran in a 10% tris-glycine SDS-PAGE gel at 100 V for 1.5 h in 1x tris-glycine running buffer. The protein samples on the gel were then transferred onto a PVDF membrane. The membranes were then blocked for 1 h at room temperature in 5% skim milk in 1x TBS-0.1% Tween 20 (TBST), followed by overnight incubation with the respective primary antibody dissolved in 5% milk in TBST at 4 °C. Secondary detection were conducted with a secondary horse-radish peroxidase-conjugated antibody (1:10000) dissolved in 5% skim milk in TBST for 1 h at room temperature. Enhanced chemiluminescence (ECL) detection of protein bands was performed using ECL Plus Western Blotting detecting system (GE Healthcare). Antibodies used in western blot include rabbit polyclonal anti-NOS2 (Santa-Cruz, sc-651, 1:100), mouse monoclonal anti-cPLA2 primary antibody (Santa Cruz, sc-454, 1:200), mouse monoclonal anti-GAPDH (Merck, 1:10000), with secondary horse-radish peroxidase-conjugated antibodies (Santa Cruz, 1:10000).
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2

Comprehensive Immunohistochemical Analysis of Tumor Microenvironment

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At sacrifice, the livers containing tumours of each mouse were sampled, fixed in zinc‐formalin and sliced to 4‐µm sections. Immunohistochemistry was performed using the EnvisionTM + system (DAKO), and immunofluorescence staining was performed using the Opal Fluorescent IHC Kit (PerkinElmer) according to the manufacturer's instructions. The MI‐77 MW rapid processor (Azumaya) was used for some reactions in the process. Immunohistochemistry was performed using the following antibodies: anti‐Ki‐67 (GTX16667, GeneTex); anti‐CD31 (ab28364, Abcam); anti‐αSMA (ab5694, Abcam); anti‐FAP (ab53066, Abcam); anti‐CD4 (#25229, Cell Signaling); anti‐CD8α (#98941, Cell Signaling); and anti‐FOXP3 (#12653, Cell Signaling). Immunofluorescence staining was performed utilizing the following antibodies: anti‐F4/80 (ab6640, Abcam); anti‐NOS2 (sc‐651, Santa Cruz); anti‐CD163 (ab182422, Abcam); and anti‐VEGF‐A (sc‐152, Santa Cruz). A confocal microscope (FV1000D, Olympus) was used for fluorescence observation. For all the studies, randomly selected fields (100 × magnification) for every large metastasis (ie those> 1 mm2) were analysed using WinROOF version 3.6 (Mitani).
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3

Western Blot Analysis of Cell Signaling

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The cell lysates (20 µg) underwent electrophoresis and were transferred to the nitrocellulose membrane. The latter were blocked in 5% of non-fat milk in PBS 0.1% Tween-20, then incubated in the presence of mouse monoclonal anti-β actin antibody (antibody dilution 1:5000) (A5316 Sigma, St. Loius, MO, USA), rabbit polyclonal anti-Nitric Oxide Synthase-2 (NOS-2) antibodies (antibody dilution 1:200) (sc-651 purchased by Santa Cruz biotechnology, Santa Cruz, CA, USA), mouse monoclonal anti-Matrix Metalloproteinases-9 (MMP-9), and anti-Bax antibodies (antibodies dilution 1:200) (sc-5302 and sc-7480, respectively, both purchased by Santa Cruz biotechnology, Santa Cruz, CA, USA), goat polyclonal anti-caspase-3 antibody (antibody dilution 1:200) (sc-1225 purchased by Santa Cruz biotechnology, Santa Cruz, CA, USA). Samples were then probed with specific enzyme conjugated IgG horseradish peroxidase. Immunoreactive bands were revealed by ECL system (Amersham Int., Buckunghamshire, UK) and underwent densitometric analysis. Values obtained from densitometry, expressed as Integrated Optical Intensity (IOI), were evaluated with a CHEMIDOC XRS system through the QuantiOne 1-D analysis software (BIORAD, Richmond, CA, USA). Data were normalized with densitometric values derived from β-actin loading control.
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4

Immunohistochemical Evaluation of iNOS and Desmin

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To analyze the immunohistochemical expressions, anti-iNOS and anti-desmin antibodies were used. Paraffin sections were immersed in xylene overnight and incubated in methanol containing 3% H2O2 to reduce endogenous peroxidase activity. Sections were heated in sodium citrate solution in a microwave oven at 90 W for 5 min and at 360 W for 15 min. Subsequently, sections were incubated in primary antibodies (anti-desmin, Bioss, bs-1026R, USA; 1/100 and anti-iNOS, Santa Cruz, Sc-651, USA; 1/100) for 24 h at 4ºC. Antibody detection was performed with the Histostain-Plus Bulk kit (Bioss, Inc) against rabbit IgG, and 3,3′ diaminobenzidine (DAB) was used to visualize the final product. Immunoreaction was assessed by light microscopy (Olympus BX-51 light microscope, Olympus C-5050 digital camera) at 40× magnification.
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5

Western Blot Protein Analysis

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Using a 7% SDS-polyacrylamide gel, electrophoresis was performed to analyze the protein from cell lysates and subsequently electrophoretically transferred to a polyvinylidene difluoride membrane. The membrane was treated with 5% non-fat milk for 1 h to block non-specific binding and probed with a rabbit anti-human polyclonal iNOS antibody (sc-651; Santa Cruz Biotechnology, Santa Cruz, CA, USA) at a final dilution of 1:1,000. The primary antibodies were detected using biotin-rabbit anti-mouse immunoglobulins G, A and M (heavy and light chains; Zymed, San Francisco, CA, USA) and alkaline phosphate-conjugated streptavidin, and were visualized using 4-nitro blue tetrazolium chloride or 5-bromo-4-chloro-3-indolyl-phosphate substrate (Promega, Madison, WI, USA).
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6

Immunoblot Analysis of Angiogenic Factors

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The C6 cell lysates (20 µg) were electrophoresed and transferred to the nitrocellulose membrane. Nitrocellulose membranes, blocked in 5% of non-fat milk in PBS 0.1% Tween-20, were probed with mouse monoclonal anti-β actin antibody (antibody dilution 1:5000) (A5316 Sigma, MO, USA), rabbit polyclonal anti-VEGF anti-NOS-2 antibodies (antibodies dilution 1:200) (sc-152, sc-651, respectively, both purchased by Santa Cruz biotechnology, CA, USA), mouse monoclonal anti-HIF-1α, anti-MMP-9, anti-MMP-2, anti-NOS-1 antibodies (antibodies dilution 1:200) (sc-5354, sc-393859, sc-13595, sc-5302, respectively, all purchased by Santa Cruz biotechnology, CA, USA), then incubated in the presence of specific enzyme conjugated IgG horseradish peroxidase. Immunoreactive bands were detected by ECL system (Amersham Int., Buckunghamshire, UK) and analyzed by densitometry. Densitometric values, expressed as Integrated Optical Intensity (IOI), were estimated in a CHEMIDOC XRS system by the QuantiOne 1-D analysis software (BIORAD, Richmond, CA, USA). Values obtained were normalized based on densitometric values of loading control β-actin.
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7

Western Blot Analysis of mTOR Pathway

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Following SDS-PAGE and transfer to nitrocellulose, membranes were incubated overnight at 4°C with primary antibodies against iNOS (sc-651, Santa Cruz Biotech), mTOR (sc-2983 Santa Cruz), p-mTOR Ser 2448 (sc-2971 Santa Cruz), Phospho-4E-BP1 (Thr37/46) (sc-9459, Santa Cruz), 4E-BP1 (sc-9977, Santa Cruz), Tuberin/TSC2 (D57A9) (sc-3990 , Santa Cruz), Hamartin/TSC1 (sc-4906), Actin (sc-1616, Santa Cruz) followed by appropriate secondary antibody conjugated to horseradish peroxidase. Results were visualized by commercial chemiluminiscence kit (Millipore). Relative signal intensities for total and phospho-proteins were quantitated by densitometry using Image-J software (National institutes of Health, Bethesda, MD), and normalized densitometry values were expressed as ratio of phospho- to total protein levels.
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8

Neuroinflammation and Oxidative Stress

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Acetic acid, disodium hydrogen phosphate, reduced glutathione (GSH), reduced nicotinamide adenine dinucleotide phosphate (NADPH), Potassium chloride, Ammonum chloride, Sodium dihydrogen phosphate, and Bovine Serum Albumin (BSA) were procured from Sisco Research Laboratories (SRL; Mumbai, India). 1-Methyl-4-phenyl-1,2,3,6-tetra hydropyridine (MPTP), Normal Goat Serum (NGS) from Sigma–Aldrich (St. Louis, MO, United States). Protein estimation kit by Bradford GeNeiTM, hydrogen peroxide (H2O2), and potassium dichromate were purchased from Merck (Darmstadt, Germany), Sodim dodecyl sulfate (SDS), Thiobarbituric acid (TBA), Griess reagent and DABCO were procured from HiMedia (Mumbai, India). Sodium nitrite and Paraformaldehyde were purchased from Lobachemie, India. Primary antibodies for TH (SC-25269), iNOS (SC-651), Glial Fibrillary Acidic Protein (GFAP) (SC-33673) and Intercellular Cell Adhesion Molecule (ICAM) (SC-8439) were procured from Santa Cruz, Biotechnology (Santa Cruz, CA, United States) and the primary antibodies for TNF-α (ab1793), NF-κB (ab16502), DAT (ab111468), and pAkt1 (ab81283) were purchased from Abcam Life Science, Biogenuix Medsystems, Pvt. Ltd. (New Delhi, India), secondary fluorescent tagged antibodies for IHCCy2-conjugated and cy3-conjugated were procured from Merck Millipore and Chemicon respectively.
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9

MPTP-Induced Parkinson's Disease Model

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Chlorogenic acid, MPTP, and normal goat serum (NGS) were bought from Sigma–Aldrich (St. Louis, MO, United States). Acetic acid, ammonium chloride, bovine serum albumin (BSA), potassium chloride, disodium hydrogen phosphate, reduced nicotinamide adenine dinucleotide phosphate (NADPH), and sodium dihydrogen phosphate were procured from Sisco Research Laboratories (SRL, Mumbai, India). Protein estimation kit by Bradford GeNeiTM, hydrogen peroxide (H2O2), and potassium dichromate were purchased from Merck (Darmstadt, Germany), and sodium dodecyl sulphate (SDS), thiobarbituric acid (TBA), DABCO, and Griess reagent were obtained from HiMedia (Mumbai, India). Paraformaldehyde and sodium nitrite were bought from Lobachemie, India. Primary antibodies for TH (SC-25269), iNOS (SC-651), and glial fibrillary acidic protein (GFAP; SC-33673) were purchased from Santa Cruz, Biotechnology (Santa Cruz, CA, United States), and the primary antibodies for TNF-α (ab1793) and NF-κB (ab16502) were obtained from Abcam Life Science, Biogenuix Medsystems Pvt. Ltd. (New Delhi, India), and secondary fluorescent-tagged antibodies such as Cy2 conjugated and Cy3 conjugated for immunohistochemistry were bought from Merck Millipore and Chemicon, respectively.
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