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33 protocols using cd11c fitc

1

Cross-presentation Experiments with Antibodies

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The following antibodies were used in the cross-presentation experiments: TruStain Fcblock anti-mouse CD16/32 (101320; BioLegend), FITC-CD11c (117306; Biolegend), APC-H2Kb-bound SIINFEKL (141606; Biolegend), APC/Cy7-CD40 (124637; Biolegend), PerCP/Cy5.5- ICAM_1 (116123; Biolegend), BV510-CD86 (563077; BD), PE/Cy7-MHC-II (107629; Biolegend), V450-CD80 (12519; BD). The following antibodies were used for the immunological analysis in the in vivo animal experiments: FITC-CD8 (553062; BD), PE-CD4 (100408; Biolegend), APC-CXCR3 (562266; BD), PerCP/Cy5.5-CD3 (100732; Biolegend), PE-CXCR3 (155903); FITC-CD8 (11083782); PerCP/Cy5.5-CD3 (100328);. Flow cytometric analyses were performed using Fortessa LSR Flow Cytometer (BD Biosciences) or BD Accuri C6 Plus (BD Bioscience). FlowJo software v.10 (FlowJo) was used for the data analysis.
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2

Characterization of Peritoneal Immune Cells

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Peritoneal exudate cells (PECs) were obtained from the peritoneal cavity from distinct groups of mice 6 weeks p.i. of MLD-STZ. The cells were washed twice with physiological saline solution, and the red blood cells were lysed by resuspending the cells in Boyle's solution (0.17 M Tris and 0.16 M ammonium chloride). Following two washes, the viable cells were counted by trypan blue exclusion with a Neubauer hemocytometer. The PECs were adjusted (1 × 106 cells), and Fc receptors were blocked with anti-mouse CD16/CD32 (Biolegend, CA, USA) and then stained with APC-F4/80, APC-CD11b, FITC-CD11c, FITC-MMR, PE-PDL-1, PE-PDL-2, PE-IL-4Rα, and PE-Gr1 (all from Biolegend, CA, USA) and incubated for 30 minutes at 4°C in FACSFlow staining buffer (Becton Dickinson). The cells were analyzed using a FACsCalibur and CellQuest Software (Becton Dickinson).
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3

Flow Cytometry Analysis of Dendritic Cell and T Cell Activation

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Mouse BMDCs, or THP-1 cells, were stained with the following surface markers; FITC-CD11c, PE-CD40, PE-CD80, PE-86, PE-MHC-I, PE-CD83, or PE-CCR7 (BioLegend). Human DCs were stained with FITC-labeled anti-HLA-DR, PE-labeled anti-CD80, and FITC-labeled anti-CD86 (Miltenyi). Cell activation was analyzed using a FACSCalibur with CELLQuest (Becton Dickinson, New Jersey, USA). To assess CD8+ T cell generation in vivo, splenocytes from treated or vaccinated mice were stained with PE-labeled anti-CD8a (BioLegend) and FITC-labeled anti-IFN-γ (BioLegend). FITC-labeled IFN-γ staining was performed using an intracellular staining kit (BD Bioscience).
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4

Evaluating aAGd-NWs+RT on Antigen Presentation

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To detect the impact of aAGd-NWs+RT on specific antigen presentation, B16-OVA subcutaneous tumor model was established on C57 mice. Initially, 5 × 105 B16-OVA cells were subcutaneously injected into the mice. After a period of 7 days, when the average tumor size in the mice carrying B16-OVA tumors reached approximately 100 mm3, the mice were grouped randomly into six distinct categories: Vehicle, GGd-NCPs, aAGd-NWs, Vehicle+RT, GGd-NCPs+RT, and aAGd-NWs+RT ([Gd] = 15.7 mg kg−1 and [ara-AMP] = 34.7 mg kg−1). Treatments were performed on day 0 and day 6, respectively, and followed by RT (5 Gy × 2) 6 h post treatment. On day 8, tumor draining lymph nodes were harvested and processed into single-cell suspensions. The cells thus obtained were stained for 30 min using a combination of FITC-CD11c and APC-H2Kb-SIINFEKL antibodies (BioLegend, USA). Subsequently, these cells were analyzed through flow cytometry using the BD FACSCalibur system (USA).
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5

iPSC-Derived Macrophage Differentiation and Characterization

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iPSCs lines MiPS.5 were purchased from Shanghai Sisansai Biological Technology Co Ltd (Catalogue No. 0225-100) and maintained in serum-free and feeder-free medium (DMEM/F12, Neurobasal medium, 0.5% N2, 1% B27, 0.1% 2-mercaptoethanol (ME), 1% Penicillin-Streptomycin, 0.1‰ StemoleculeTM PD0325901, 0.32‰ StemoleculeTM CHIR99021, 0.1‰ LIF). Mouse bone marrow stromal cells, OP9, were maintained in DMEM supplemented with 10% fetal calf serum (FCS) and seeded onto gelatin-coated dishes before use as feeder cells. Recombinant mouse interleukin (IL)-4 and granulocyte macrophage colony-stimulating factor (GM-CSF) were obtained from Perprotech (London, United Kingdom). Lipopolysaccharide (LPS) was purchased from Sigma Chemical (St. Louis, MO). Monoclonal antibodies of rabbit anti-mouse fluorescein isothiocyanate (FITC)-CD45, FITC-CD11b, FITC-CD80, FITC-CD86, FITC-MHC-II, FITC-CD11c, CD4, CD25, FoxP3, Bcl-2, Bax, Caspase3, and poly(ADP-ribose) polymerase (PARP) were obtained from Biolegend (California, United States). SN was obtained from Xidiai Chemical Industrial Development Co Ltd (Shanghai, China).
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6

Induction of Pyroptosis and IBD in Mice

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Lipopolysaccharides (LPS) (E. coli O111:B4) and nigericin (14K05-MM) used to induce pyroptosis were purchased from Invitrogen. Dextran sodium sulfate (DSS) (#118K7374V) used to induce inflammatory bowel disease (IBD) mouse model were obtained from Sigma-aldrich. Anti-mouse antibodies like NLRP3 (#AG-20B-0014, Adipogen), Caspase1-p20 (#AG-20B-0042, Adipogen), IL-1β (#12426, Cell Signaling Technology), GSDMDC1 (#sc-393656, Santa Cruz Biotechnology), alpha Tubulin (#66031-1-1 g, Proteintech), HRP goat anti-mouse IgG antibody (#EK010, Zhuangzhibio), and HRP goat anti-rabbit IgG antibody (#EK020, Zhuangzhibio) were used for immunoblot analysis. The anti-mouse antibodies used for flow cytometry analysis were as follows: APC-CD105 (#MJ7/18, Biolegend), APC-CD90 (#OX-7, BD), PE-CD44 (#IM7, BD, USA), PE-CD51 (#RMV-7, eBioscience), APC-CD3 (#17A2, Biolegend), APC-CD45R/B220 (#RA3-6B2, Biolegend), FITC-CD14 (#Sa14-2, Biolegend), FITC-CD11c (#117306, Biolegend), APC-CD11b (#101212, Biolegend) and APC-Gr1 (#17–5931, eBioscience). The IL-1β Enzyme-Linked Immunosorbent Assay (ELISA) kit was purchased from R&D Systems (#P16807).
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7

Macrophage Polarization Analysis by Flow Cytometry

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Flow cytometry was used to determine the expression of macrophage polarization-related markers on the cell membrane. CD86 and CD11c are highly expressed on M1 macrophages, and CD206 and CD163 are highly expressed on M2 macrophages. A total of 2 × 104 cells were seeded on the material surfaces in each well of 24-well culture plate. At 3 and 7 days after culture, the cells were gently collected using a cell scraper. Antibodies, including PE-CD86, FITC-CD11c, PE-CD163 and APC-CD206 (all from Biolegend, USA), were added to the samples, which were then incubated at 4 °C for 1 h, with protection from light. The cells were detected by flow cytometry, and the positive fractions of the M1 and M2 populations were analyzed using Flow Jo 7.6 software.
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8

Multiparameter Immune Cell Profiling

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Cell suspensions were stained with appropriate antibodies for 30 min on ice. The commercial antibodies used in this study included anti-mouse FITC-CD45 (BioLegend, CA, USA, #103108; 1 µg per 106 cells), PE-CLEC2 (BioLegend, CA, USA, #146104; 1 µg per 106 cells), BV421-F4/80 (BioLegend, CA, USA, #123137; 1 µg/106 cells), Pe/Cy7-CD64 (BioLegend, CA, USA, #128016; 1 µg per 106 cells), Percp/Cy5.5-CD11b (BioLegend, CA, USA, #101228; 1 µg per 106 cells), APC/Cy7-PirB (R&D, CA, USA, #FAB2754S; 5 µg per 106 cells), APC-Ly6C (BioLegend, CA, USA, #128016; 1 µg per 106 cells), APC-Ly6G/Ly-6C (Gr-1) (BioLegend, CA, USA, #108411; 1 µg per 106 cells), PerCP-CD19 (BioLegend, CA, USA, #115531; 1 µg per 106 cells), APC-CD3 (BioLegend, CA, USA, #100235; 1 µg per 106 cells), APC-CD206 (BioLegend, CA, USA, #141707; 2 µg per 106 cells), and FITC-CD11c BioLegend, CA, USA, #117305; 1 µg per 106 cells); and anti-human PE-CD14 (BD Biosciences Pharmingen, USA, #555398; 20 µl per 106 cells), Mouse anti-human LILRB2 (R&D, R&D Systems, MN, USA, #MAB2078; 0.25 µg per 106 cells), and Goat Anti-Mouse FITC-IgG (Servicebio, Wuhan, China, #SF131; 1:200 dilution). All antibodies were diluted according to the manual from the manufacturer’s website. Dead cells and doublets were removed by dead-cell dye staining (Zombie Aqua Fixable Viability Kit, BioLegend, CA, USA, #B297827).
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9

Immunoblot and Immunofluorescence Analysis of NLRP3 Inflammasome

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LPS (E. coli O111:B4) and nigericin (14K05-MM) were from Invitrogen. DSS (#118K7374V) were from Sigma-aldrich. Anti-mouse antibodies used for immunoblot analysis were: IL-1β (#12426, Cell Signaling Technologies), NLRP3 (#AG-20B-0014, Adipogen), Caspase-1 p20 (#AG-20B-0042, Adipogen), alpha Tubulin (#66031-1-1g, Proteintech), Caspase-11 p20 (#AG-20B-0061, Adipogen). Anti-mouse antibodies used for immunofluorescent staining analysis were: GSDMDC1 (#sc-393656, Santa Cruz Biotechnology), FITC Goat Anti-Mouse IgG Antibody (L146A, Gene Copoeia), AF647TM Goat Anti-Mouse IgG Antibody (L125A, Gene Copoeia). Anti-mouse antibodies used for flow analysis were: APC-CD45 (#30-F11, Biolegend), APC-Ter119 (#17-5921, eBioscience), PE-CD44 (#IM7, BD, USA), PE-CD51 (#RMV-7, eBioscience), APC-CD90 (#OX-7, BD), APC-CD105 (#MJ7/18, Biolegend), PE-CD146 (#P1H12, eBioscience), PE-CD166 (#105902, R&D), FITC-Sca-1 (#122505, Biolegend), APC-CD3 (#17A2, Biolegend), FITC-CD11c (#117306, Biolegend), APC-CD11b (#101212, Biolegend), APC-Gr1 (#17-5931, eBioscience), FITC-F4/80 (#123108, Biolegend), APC-CD19 (#17-5921, eBioscience), and FITC-CD14 (#Sa14-2, Biolegend).
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10

Staining Surface Markers of DCs and TILs

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For the staining surface marker of DCs and TILs, APC anti‐mouse CD4, FITC‐CD11c, APC‐CD40, PerCP/Cy5.5‐CD80, and PE/Cy7‐CD86, and the Treg flow kit were purchased from BioLegend Japan (Tokyo). Fluorescein isothiocyanate‐labeled mouse CD8 was purchased from MBL (Nagoya, Japan). Cultured DCs were harvested, centrifuged, and suspended in 2% FBS/PBS. Their surfaces were then stained with FITC‐CD11c, APC‐CD40, PerCP/Cy5.5‐CD80, and PE/Cy7‐CD86 for 30 minutes at 4°C. Tumor‐infiltrating lymphocytes were incubated with the APC‐CD4, FITC‐CD8, or CD4/CD25/Foxp3 cocktail according to the manufacturer's instructions, followed by an analysis with a FACSVerse flow cytometer (BD Biosciences, Mountain View, CA, USA) and FlowJo software (version 7.6.5).
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