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Cytosine arabinofuranoside

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Cytosine arabinofuranoside is a synthetic nucleoside analog used as a research tool in biological and biochemical studies. It has a molecular structure similar to the natural nucleoside cytidine, with an arabinose sugar moiety instead of the typical ribose. Cytosine arabinofuranoside is commonly used as a laboratory reagent for investigating cellular processes and DNA/RNA metabolism.

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10 protocols using cytosine arabinofuranoside

1

Murine Cortical Neuron Culture Protocols

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Primary cortical neuronal cultures were prepared from embryonic day 16 C57Bl/6 mice as described previously.60 (link) Primary cortical neurons were grown in a culture medium composed of Neurobasal medium (Invitrogen, Carlsbad, CA, USA), 2% B27 supplement (Invitrogen), 2 mM l-glutamine, and 1% penicillin-streptomycin, as described previously.60 (link) After 3 days of culture, a third of the medium was replaced with fresh, L-glutamine-free medium containing 5 μM cytosine arabinofuranoside (Sigma) to arrest non-neuronal cell growth. Experiments were conducted on the 12th day of culture, by which time the cultures consisted primarily of neurons (>95% MAP-2–immunoreactive cells; MAP-2 was obtained from Chemicon (Temecula, CA, USA).
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Isolation and Culture of Cerebellar Neurons

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The cerebellar neurons were prepared from 7-day-old rat Wistar pups (12–18 g). Cerebellar granule cells were isolated and cultured according to the method described by [47 (link)] with modifications [48 (link)]. The isolated cerebella were placed in a 35 mm Petri dish, catted into slices, and incubated in Krebs ionic buffer containing 0.025% trypsin (Sigma Aldrich, Steinheim, Germany) and 0.05% DNase (Roche, Basel, Switzerland). Subsequently, a trypsin inhibitor was added; the cerebellar slices were collected via centrifugation, triturated, and re-centrifuged. The cells were suspended in basal medium eagle supplemented with 10% fetal calf serum, 25 mM KCl, penicillin/ streptomycin (Sigma Aldrich, Steinheim, Germany) and passed through a syringe with a thick needle. After centrifugation, the single-cell suspension was seeded onto poly-L-lysine-coated glass coverslips at a density of 125–250 × 103 cells/well. Forty-eight hours after seeding, 1.2 mM glucose and 7.5 mM cytosine arabinofuranoside (Sigma Aldrich, Steinheim, Germany) were added to inhibit the proliferation of astrocytes and fibroblasts. Immunolabeling was performed on 7-day neurons.
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Cortical Neuron Isolation and OGD Procedure

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All experiments were carried out in accordance with the Animal Experiment Committee of the Institute of Medical Science, the University of Tokyo. Cortical neurons from B6 Albino mice (B6N-Tyrc-Brd/BrdCrCrl, Charles River Laboratories International, Inc.) were prepared according to previous reports (12 (link), 13 (link)). Briefly, embryonic day 16 fetuses (n = 21) were taken from euthanized, pregnant mice in sterile conditions. Fetal brains were removed and cortical tissues were dissected under a microscope. The meninges were then removed and cortical tissues were chopped into small pieces. Cells were dispersed followed by mechanical trituration using Neuron Dissociation Solutions (Wako Pure Chemical Industries, Ltd., Japan) and filtered through a 70 μm pore-size cell strainer. Cells were then resuspended in neurobasal medium (GIBCO) supplemented with 2% B27 (Invitrogen) and plated onto Poly-L-Lysine Culture Dishes (BioCoat™, Corning Inc. Japan). Cells were cultured in a humidified incubator at 37°C with 5% CO2, and half of the medium was replaced with fresh solution every 3 days. To reduce contamination by glial cells, 10 μM cytosine arabinofuranoside (Sigma-Aldrich) was added for 24 h on the 4th day of culture. We cultured cortical neurons for 7days, and OGD procedure was performed.
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Cerebellar Granule Cell Culture Protocol

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Primary cultures of cerebellar enriched in granule cells were prepared from 8-day-old Sprague-Dawley rats [22 (link), 23 (link)]. Cerebellar granule cells were seeded, respectively, in 96-well microplates (1.0 × 105 cells per well) dishes coated with poly-L-lysine (50 μg/mL; Sigma, St. Louis, MO, USA). The cells were resuspended in the following culture media: DMEM, 10% heat-inactivated fetal bovine serum, glutamine (2.0 mM), gentamicin (100 μg/mL), antibiotic-antimycotic solution (10 μg/mL; Sigma), and potassium chloride (25 mM). After seeding the cells, incubated in a humidified atmosphere of 5% CO2/95% air at 37°C for 6-7 days. Cytosine arabinofuranoside (final concentration, 10 μM; Sigma) was added after 16 h of culture to inhibit the replication of nonneuronal cells.
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5

Primary Hypothalamus Cell Culture Protocol

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Primary cultures of the SD rats’ hypothalamus cells were tested for 7–8 days (Ma et al., 2007 (link)). The cells were seeded at 1.0×105 cells in 96-well microplates coated with poly-L-lysine (50 μg/mL; Sigma, St. Louis, MO, USA). The DMEM used for cell cultures contained 10% fetal bovine serum, glutamine (2.0 mM), gentamicin (100 μg/mL), antibiotic-antimycotic solution (10 μg/mL; Sigma), and potassium chloride (25 mM). Cells were incubated at 37°C in a humidified atmosphere of 5% CO2/95% O2 air. After 16 h, the 96-well plates were added into cytosine arabinofuranoside (final concentration 10 μM; Sigma) to inhibit non-neuronal cell growth.
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Cerebellar Granule Neuron Culture Protocol

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Primary cultures of CGNs were prepared from 7-day-old
pups of Wistar rats (Rattus norvegicus). All animal experiments were authorized by the University of Bologna
Bioethical Committee (Protocol no. 1088; Code 2DBFE.N.BFY) and performed
according to Italian and European Community laws on the use of animals
for experimental purposes. For cerebellar granule cultures, cells
were dissociated from cerebella and plated on 35 mm Ø dishes,
previously coated with 10 μg/mL poly-l-lysine, at a
density of 1.2 × 106 cells/2 mL of medium BME supplemented
with 100 mL/L heat-inactivated FBS (Life Technologies), 2 mmol/L glutamine,
100 μmol/L gentamicin sulfate, and 25 mmol/L KCl (all from Sigma-Aldrich);
16 h later, 10 μM cytosine arabinofuranoside (Sigma-Aldrich)
was added to avoid glial proliferation. After 7 days in vitro, differentiated
neurons were shifted to serum-free BME medium containing 25 mmol/L
KCl without the serum and different treatments were performed. For
neurotoxicity experiments, differentiated CGNs were exposed to 10 μM
concentration of the studied compounds for 24 h in serum-free BME
(25 mM KCl). The experiment was performed in triplicate. Since the
native fluorescence of the library could interfere with the reading
of the classical MTT cell viability assay, the Hoechst 33258 staining
was performed to count healthy and apoptotic nuclei.
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Neural Differentiation on Biomaterial Substrates

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Human neuroblastoma SH-SY5Y cells were differentiated on different surfaces (Cultrex-coated glass, laminin-coated glass, laminin-coated or not PLLA-FILM, laminin-coated or not random and aligned electrospun PLLA scaffold) using 10 μM RA and cultured for 7 days.
Primary neurons were isolated from newborn mice cortex and cytosine-arabinofuranoside (10 μM; Sigma) was added to the culture medium, to inhibit proliferation of the glial cells,7 (link) and cultured for 15 days.
NSCs were obtained from embryos forebrain and secondary neurospheres were dissociated and plated at a density of 1 × 104 cells/cm2 in the same culture medium without mitogens.8 (link),9 (link) To achieve full lineage commitment and cell differentiation, seeded cells were cultured for 15 days.
Animal care and treatment were in accordance with the EU Directive 2010/63/EU and approved by the Ethics Committee of Animal Experimentation, University of Bologna.
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Hypothalamus Primary Cell Culture Protocols

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Primary cultures of hypothalamus were prepared from of 8 days old Sprague-Dawley rats as previously described (Ma et al., 2007 ). After 8 days in culture, these cells express functional GABAA receptors, with an expression pattern similar to that of the hypothalamus during postnatal development, but different from the pattern observed in the adult rats. Briefly, hypothalamus cells were plated (1.0×105 cells per well) in 96 well microplates that had been coated with poly-L-lysine (50 μg/mL; Sigma, St. Louis, MO, USA), and were cultured DMEM nutrient and neurobasal A media supplemented with 10% heat-inactivated fetal bovine serum, glutamine (2.0 mM), gentamicin (100 μg/ml), antibiotic-antimycotic solution (10 μg/ml; Sigma), and potassium chloride (25 mM); such a high concentration of potassium was necessary to induce persistent depolarization, which promotes the survival of granule cells. The cells were incubated for 6–9 days in a humidified 5% CO2/95% air atmosphere at 37°C. Cytosine arabinofuranoside (final concentration, 10 μM; Sigma) was added to cultures 18–24 h after plating to inhibit the proliferation of non-neuronal cells.
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9

Primary Murine Hippocampal Neuron Culture

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Hippocampi were dissected from P0 CD-1 mice, and cells were dissociated by papain (Worthington; Cat# LS003127) digestion for 20 min at 37°C, filtered through a 70-µm cell strainer (Falcon; Cat# 352350), and plated on Matrigel (Corning; Cat# 356235)-coated 0-thickness glass coverslips (Assistent; Cat# 01105209) in 24-well plates. Plating media contained 5% fetal bovine serum (Atlanta), B27 (Gibco; Cat# 17504044), 0.4% glucose (Sigma), and 2 mM glutamine (Gibco; Cat# 25030164) in 1× MEM (Gibco; Cat# 51200038). Culture medium was exchanged to growth medium 24 h later (1 DIV), which contained 5% fetal bovine serum (Atlanta), B27 (Gibco), and 2 mM glutamine (Gibco) in Neurobasal A (Gibco; Cat# 10888022). Cytosine arabinofuranoside (Sigma; Cat# C6645) was added at a final concentration of 4 µM on 3 DIV in a 50% growth media exchange, and neurons were analyzed 14–16 DIV.
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10

Isolation and Treatment of Rat Neuronal Cells

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Primary neuronal cells were prepared from Long-Evans rat embryos on the 18th day of gestation as described previously [20 (link)]. Brainstems from the fetal brains were dissected out, the tissues were triturated by repeatedly pipetting, and the isolated cells cultured in a serum-free neurobasal medium supplemented with B-27 at a density of 5 × 104 cells/well in 24-well plate. After incubation for 3 days, half of the medium was replaced with fresh medium with cytosine arabinofuranoside (10 μM; Sigma) but without l-glutamic acid, and additional incubation at 37°C was carried out. Six days after seeding, the cultured primary neuronal cells were treated with 10 nM E2, PPT (ERα agonist), and DPN (ERβ agonist) for 24 h, respectively.
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