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38 protocols using mmp 1

1

Aging and Senescence Pathway Analysis

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SBG was purchased from Biopurify Phytochemicals (Chengdu, China). D-galactose (D-gal) was purchased from Aladdin (Shanghai, China). Vitamin C was obtained from Yuanye Biotechnology (Shanghai, China). Biochemical kits for SOD, MDA, ROS and HYP were purchased from Jiancheng Bioengineering Institute (Nanjing, Jiangsu, China). Staining kit for senescence-associated-β-galactosidase (SA-β-gal) was obtained from Beyotime Biotechnology (Shanghai, China). Antibodies against GAPDH, MMP-1, p53, BMAL1, REV-ERBɑ, BHMT and NLRP3 were purchased from Abcam (Cambridge, United Kingdom).
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2

Chondroprotective Effects of Silibinin

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Silibinin (purity >98 %), recombinant human IL-1β, collagenase type II, Safranin-O/Fast Green and dimethylsulfoxide (DMSO) were obtained from Sigma Chemical Co. (St. Louis, MO, USA). Cell-Counting Kit-8 (CCK-8) was purchased from Dojindo (Kumamoto, Japan). Primary antibodies against COX-2, iNOS, MMP-1, MMP-3, MMP-13, ADAMTS-4 and ADAMTS-5 were purchased from Abcam (Cambridge, MA, USA). Primary antibodies against p65, p-p65, IkBα, p-IkBα, PI3K, p-PI3K, Akt and p-Akt were purchased from Cell Signaling Techonology (Beverly, MA, USA). Goat anti-rabbit and goat anti-mouse horseradish peroxidase conjugates were purchased from Bio-Rad Laboratories (Calif., USA). Fetal bovine serum (FBS), bovine serum albumin (BSA), Dulbecco’s modified Eagle’s medium (DMEM)/Ham’s F12 medium and 0.25% trypsin-ethylendiaminetetraacetic acid (trypsin–EDTA) were purchased from Gibco (Life Technologies Corp. Carlsbad, Calif., USA). TRIzol reagent was purchased from Invitrogen (Carlsbad, Calif., USA). QuantiTect Reverse Transcription kit was purchased from Qiagen (Valencia, CA). SYBR Green Master Mix was purchased from Bio-Rad Laboratories (Calif., USA). ELISA kits of PGE2, TNF-α and IL-6 were purchased from R&D systems (Minneapolis, MN, USA). Griess reagent was purchased from Beyotime Institute of Biotechnology (Shanghai, China). All other chemicals were of reagent grade.
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3

Immunostaining and Western Blot Reagents

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Primary antibodies – EB1 (ICC-1:250, WB-1:500), GAPDH (WB-1:2500), MMP-1 (ICC-1:250), alpha-tubulin (ICC-1:500) all purchased from Abcam, Cambridge, UK. Fibronectin (ICC-1:100, WB-1:1000, Developmental Studies Hybridoma Bank, Iowa city, IO), NEO1 (ICC-1:50, WB-1:250, Santa Cruz Biotechnology, Dallas, TX), ZO-1 (ICC-1:350, WB-1:2500, Thermo Fisher Scientific), E-Cad (ICC-1:250, WB-1:2500, BD Biosciences), L1CAM (ICC-1:1000, a kind gift from Prof. Heather Young, University of Melbourne). Alexa Fluor (AF) conjugated secondary antibodies for ICC – Donkey anti-goat AF 488, Donkey anti-mouse AF 546 and 647, Goat anti-rat AF 488 and 546, Goat-anti rabbit AF 488. All the secondary antibodies for ICC were used at a dilution of 1:500, were highly cross-adsorbed and purchased from Molecular probes. Horse-radish peroxidase (HRP) conjugated secondary antibodies for WB- Goat anti-mouse HRP, Goat anti-rat HRP, Goat anti-rabbit HRP, Donkey anti-goat HRP. All HRP conjugated antibodies were used at a dilution of 1:5000 and were purchased from Jackson Labs (Bar Harbor, ME). Rhodamine Phalloidin (1:250, Cytoskeleton Inc, Denver, CO), 4′,6-diamidino-2-phenylindole or DAPI (1:1000, Thermo Fisher Scientific).
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4

Western Blot Analysis of EMT Markers

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The proteins of each group were collected, and the precipitate was separated by lysis, shock, and centrifugation. The precipitate was separated by electrophoresis in 10% SDS-PAGE gel then transferred to PVDF membrane. Following 5% non-fat milk or BSA blocking, the membranes were incubated with related primary antibodies at 4°C overnight. Then, the membranes were incubated with secondary antibodies for 1 h and imaged by ECL chemiluminescence kit (Bio-Rad). The antibodies utilized as follows: MMP1 (1 : 1000; ab137332; Abcam), Vimentin (1 : 2000, #5741, CST), Snail (1 : 1000, #3879, CST), E-cadherin (1 : 2000, #3195, CST), N-cadherin (1 : 1000, #13116, CST), and GAPDH (1 : 2000 dilution, #2118, CST).
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5

Protein Expression in Cartilage Tissue

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Cartilage tissue and chondrocytes were homogenized in a lysate containing protease inhibitors and protein extraction was performed as previously described [16 (link)].
Western blotting was performed according to the manufacturer’s instructions. The primary antibodies used were as follows: NLRP3, ASC, thioredoxin-interacting protein (TXNIP), and caspase-1 (1:1000, Abcam, Cambridge, MA, USA); MMP-1, MMP-13, collagen II, and Unc-51-like kinase 1 (ULK1) (1:2000, Abcam, Cambridge, MA, USA);p-NF-κB and inhibitor kappa B-alpha (IκB-ɑ) (1:500, Cell Signaling Technology, Danvers, MA, USA); and Beclin-1, light chain 3 (LC3), GAPDH, and β-actin (1:500–1:2000, Santa Cruz Biotechnology, Santa Cruz, CA, USA). Antigen-antibody complexes were visualized using an ECL Western Detection Kit (Thermo Fisher Scientific, Waltham, MA, USA). Protein levels were normalized to the levels of β-actin or GAPDH. ImageJ software was used to quantify the density of each band.
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6

Quantification of MMP-1 and MMP-10 in Keratinocytes

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Supernatant samples were collected after one week of culturing the isolated keratinocytes. Commercially available kits for human Matrix metalloproteinase −1 (MMP-1; Abcam, United Kingdom) and MMP-10 (Abcam, United Kingdom) were used according to the manufacturer's protocol. In brief, the samples and standards were incubated at room temperature for 2.5 h, while the biotinylated antibody was incubated for 1 h with MMP-1 or MMP-10. The developed color was read at 450 nm using SpectraMax Plus 384 Microplate Reader (Molecular Devices, USA).
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7

Quantification of Epidermal Hyperproliferation in UV-Exposed Mouse Skin

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Mouse skin tissues were fixed in 4% paraformaldehyde for 24 h, and embedded in paraffin. Serial sections (4 μm) were mounted onto silane-coated slides and stained with Hematoxylin and eosin (H&E) for general histopathology or Masson’s trichrome to detect collagen, respectively. For MMP-1 immunostaining, the EnvisionTM staining kit (DAKO, was used according to the manufacturer’s instructions. Briefly, slides were deparaffinized and rehydrated. Peroxidases and avidines (DAKO, Carpinteria, CA) were blocked at 10 and 5 min respectively. Samples were washed in PBS, incubated with the primary antibody (MMP-1, Abcam, Cambridge, MA, USA), and with the HRP rabbit EnvisionTM System (DAKO) for 1 h at room temperature. Antigen–antibody complexes were revealed by DAB (DAKO) and counterstained with Mayer’s hematoxylin. All stained skin specimens were observed and photographed using an optical microscope (Olympus, Tokyo, Japan). To quantify epidermal hyperproliferation following UV exposure, the vertical thickness of the epidermis was measured at five randomly selected locations per slide with 200× magnification (H&E staining). The data were evaluated through the image analysis program Image J 1.52 (Wayne Rasband, National Institutes of Health, Bethesda, MD, USA).
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8

Quantification of Macrophage MMP Secretion

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Enzyme-linked immunosorbant assays (ELISAs) were conducted according to the manufacturers’ instructions to quantify secretion of select matrix metalloproteases (MMPs): MMP1 (Abcam), MMP2 (R&D systems), MMP3 (Abcam), MMP7 (R&D Systems), MMP8 (R&D Systems), MMP12 (Abnova), as well as tissue inhibitor of metalloprotease 1 (TIMP1) (Peprotech) in macrophage-conditioned media. A live-cell assay conducted on macrophages after 7 days of culture (2 days of polarization) was used to quantify secretion of MMP14, according to the manufacturer’s instructions (Abcam).
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9

Protein Expression Analysis by Western Blot

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Cells were lysed with RIPA lysis buffer (Beyotime Institute of Biotechnology, Shanghai, China) according to the manufacturer's protocol. Same amount of proteins of each sample were separated by 10% SDS-PAGE gel and then transferred into PVDF membranes (Millipore, Billerica, MA, USA). After blocking with 5% non-fat milk for 1 h at room temperature, the membrane was respectively incubated with the primary antibodies against MMP-1 (Abcam), MMP-3, MMP-13, Beclin1, LC3 I/II, β-catenin, T-cell factor 4 (TCF4), c-Myc, cyclin D1 and GAPDH (Cell Signaling Technology) overnight at 4 °C at a dilution of 1 : 1000. After incubation with HRP-conjugated secondary antibodies for 1 h at room temperature, the signals were detected by ECL.
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10

Granzyme B-Induced MMP Secretion in Fibroblasts

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Wells of a 24-well culture plate were coated with 20 μg mL-1 fibronectin (FN) (Sigma) for 1 h at 37°C and then blocked with 1% sterile BSA. Wells were then treated with GzmB (100 nm) in serum/supplement-free Medium 106 (SFM; Cascade Biologics) for 2 h at 37°C. GzmB was inhibited by Compound 20 (50 μm) (Centre for Drug Research and Development, Vancouver, BC, USA) (Willoughby et al., 2002 (link)) for 30 min before primary human fibroblasts (HDFa, Life Technologies) were seeded (1.5 × 105 cells/well in SFM) and incubated for 20 h at 37°C, 5% CO2. Control wells were prepared by incubating equivalent amounts of GzmB in SFM in a separate plate (previously blocked with 1% BSA) and then inhibiting with Compound 20. The GzmB/inhibitor media solution was transferred to wells that had been previously coated with FN and blocked as described above, before seeding of cells. After 20 h, supernatants were collected, protease inhibitor cocktail (Sigma) was added, and cell debris was removed by centrifugation. Supernatants were concentrated using centrifuge filters (10 kDa) so that the whole supernatant could be separated as a single sample on a 10% SDS-PAGE gel, transferred to nitrocellulose membranes, and probed for MMP-1 (1/1000, Abcam) or MMP-3 (1/1000, Abcam). Cell lysates from the same wells were collected and probed for GAPDH.
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