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12 protocols using axioskop 20

1

Histochemical Analysis of Gametophyte Development

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Regenerated gametophytes were photographed using a Canon Powershot A350 mounted onto a compound microscope (Zeiss Axioskop 20) or a dissecting microscope (Leica M60). Histochemical assay for GUS activity was performed according to [28 (link)] and [29 (link)] with minor modifications. Briefly, the gametophytes were fixed in 80% ice-cold glycerol solution for 15 min. Next, they were vacuum infiltrated for 10 min with GUS staining solution [50 mM sodium phosphate buffer (pH 7.2), 0.5 mM potassium-ferrocyanide, and 1 mM 5-bromo-4-chloro-3-indolyl-β-d-galactopyranoside (X-gal)], then transferred to fresh GUS staining solution and incubated at 37°C for 10 h. To enhance the contrast for GUS staining, the gametophytes were cleared with 70% EtOH to remove chlorophyll before examination with a compound microscope (Zeiss Axioskop 20). For GFP6 expression analysis, leaf epidermal tissues of both untransformed and transformed sporophytes were peeled to remove the auto fluorescent signal of the chlorophyll. GFP activity was imaged with a Zeiss Axioskop 20 (excitation filter 488 nm, dichroic mirror 510 nm, emission filter 520 nm).
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2

Chemotaxis Assay for hfNBM Migration

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Cell migration was assessed using a 48-well chemotaxis chamber (Neuro Probe, Cabin John, MD, USA) with polycarbonate membranes (pore size 8 µm; Neuro Probe; #PFB8) coated with collagen type I (20 µg/mL, Sigma-Aldrich Corp.; #CC050). Briefly, the lower wells of the chamber were filled with serum-free or 10% FBS culture medium to evaluate basal or induced hfNBM migration, respectively. TNFα pre-treated (10 ng/mL for 48 h) or untreated hfNBMs (4 × 104 cells) were seeded in serum starved condition into the upper well and incubated for 6 h at 37 °C in 5% CO2 atmosphere. After the incubation period, the migrated cells in the lower side of the membrane were fixed with absolute methanol for 15 min, washed with PBS, and stained for 30 min with 10% Giemsa solution (BioOptica, Milan, Italy; #05-12005E) in PBS. No migrated cells, in the upper part of the membrane, were removed and the filter was mounted on a glass slide for visualization. The number of migrated hfNBMs was counted in blind under an optical microscope (Zeiss Axioskop 20; Carl Zeiss S.p.A., Milan, Italy) in 10 fields for each well. Each experimental point was replicated at least six times in three independent experiments.
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3

Quantitative Analysis of Intercellular Spaces in RBE4 Cells

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RBE4 cells were cultured in complete growth medium on square (22 mm × 22 mm) coverslips at 8 × 104 cell density. The steps related to starvation and treatment are the same as those described above.
After US stimulation, the specimens were fixed with 0.5% paraformaldehyde for 10 min at RT and subsequently washed twice in PBS.
The quantitative analysis of intercellular spaces was performed on RBE4 cells using a routinely used Papanicolaou staining, without the use of the Orange G6 step, in order to obtain the greatest contrast between the stained cells and the background.
Finally, the specimens were mounted on microscope glass slides with Canada balsam. All reagents used were purchased from Sigma Diagnostics (St. Louis, MO, USA). Each sample was examined by an optical microscope (Zeiss Axioskop 20; Carl Zeiss S.p.A., Milano, Italy) at different magnifications, and images were acquired with a digital photo camera (Truechrome HD, TiEsseLab S.r.l., Milano, Italy). The intercellular spaces were measured by ImageJ software (ImageJ, National Institute of Health, Bethesda MD, USA, http://imagej.nih.gov/ij, 1.53f), converting the image in black and white, and using the threshold mode, as reported in Figure 1.
Five microscopic fields were randomly selected for each experiment at different time points; each time point was performed in triplicate.
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4

HLA-G Immunofluorescence Staining Protocol

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Before IHC, cells were either not treated, treated for 30 min with 3 mL fixative PreservCyt (Hologic ® ) or treated 10 min with 600 µL 3% glacial acetic acid mucolytic (Merck ® ) then washed three times with PBS. Cells were treated for 30 min with 2 mL saturation solution, then labeled with 500 µL of G233, MEM-G/9 or 87G anti-HLA-G primary antibodies solution and finally with 1 mL anti-mouse Texas Red secondary antibody. Nuclei were counterstained with 1 µL/mL 4′,6diamidino-2-phenylindole dihydrochloride (DAPI) (Sigma-Aldrich™) and slides were mounted with coverslips before observation under epifluorescence microscopy (Zeiss Axioskop 20, Carl Zeiss) using DAPI and orange filters sets. Images were captured, processed, and merged with "Fishview" GenAsis software (Applied Spectral Imaging).
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5

Microscopy Analysis of Chromosomes

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Chromosomes were analyzed in Olympus Provis AX 70 or Carl Zeiss Axioskop 20 microscopes equipped with fluorescence lamp HBO50 and appropriate filters. Images were recorded with Olympus DP30BW CCD and cooled Carl Zeiss AxioCam HRc CCD cameras and processed using AxioVision and Lucia ver. 2.0 (Laboratory Imaging) softwares.
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6

Mitochondrial Visualization in Yeast Cells

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Electron microscopy of chemically fixed yeast cells was performed as previously described (Unger et al., 2017 (link)). For visualization of mitochondria, yeast cells were transformed with an expression vector harboring the mitochondrial presequence of subunit 9 of Fo-ATPase of Neurospora crassa fused to GFP. Microscopy images were acquired with an Axioskop20 fluorescence microscope equipped with an Axiocam MRm camera using the 43 Cy3 filter set and AxioVision software (Zeiss).
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7

Characterization of Ursolic and Betulinic Acids

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NMR spectra were recorded using the Varian spectrometers Gemini 2000 or Unity 500 (δ given in ppm, J in Hz; typical experiments: APT, H-H-COSY, HMBC, HSQC, NOESY), MS spectra were recorded on a Finnigan MAT LCQ 7000 (electrospray, voltage 4.1 kV, sheath gas nitrogen) instrument. The optical rotations were measured on a Perkin-Elmer polarimeter at 20 °C; TLC was performed on silica gel (Merck 5554, detection with cerium molybdate reagent); melting points are uncorrected (Leica hot stage microscope), and elemental analyses were performed on a Foss-Heraeus Vario EL (CHNS) unit. IR spectra were recorded on a Perkin Elmer FT-IR spectrometer Spectrum 1000. The solvents were dried according to usual procedures. The purity of the compounds was determined by HPLC and found to be >96%. Ursolic (UA) and betulinic acids (BA) were obtained from betulinines (Stříbrná Skalice, Czech Republic) in bulk quantities. Fluorescence microscopic images were recorded on an Axioskop 20 with an AxioCam MR3 (Carl Zeiss AG, Oberkochen, Germany).
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8

Prostate Stem Cell Labeling and BPA Exposure

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Primary human prostate epithelial cells (PrEC) from disease-free organ donors were cultured in ProstaLife™ medium in the presence of 1μM BrdU (Sigma-Aldrich) for 10 d to label all dividing cells as previously described (Hu et al. 2017 (link)). PrEC were next transferred to 3D Matrigel culture for 5 d to permit BrdU washout during PS formation. As documented, the rapidly proliferating progenitor cells lose the BrdU label, whereas the slow-dividing stem cells retain BrdU (Hu et al. 2017 (link)). These PS cultures contained either vehicle (0.1% ethanol), 2.5, or 25nM BPA during BrdU washout phase ( n=4/treatment ). PS were harvested by 1 U/ml dispase digestion for 15 min and allowed to attach to chamber slides during overnight culture in ProstaLife™ medium. Spheres were fixed in ice-cold acetone/methanol (1:1) for 1 h and immunostained using mouse antihuman BrdU antibody 1:200 (Sigma-Aldrich) followed by secondary antibody goat antimouse Alexa Fluor® 488 (Invitrogen) with DAPI counterstain (Vector Laboratories). BrdU+ label-retaining cells were identified and counted in >100 spheres using fluorescent microscopy (Zeiss Axioskop 20).
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9

Cellular Respiration Assay in Lettuce Roots

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A 2,3,5-triphenyltetrazolium chloride (TTC) dye is commonly used as an indicator of cellular respiration and cell viability. Its action is based on the principle that all living cells contain active dehydrogenases that catalyze chemical reductions. This method is based on visual detection of dehydrogenase activity in root tips using 2,3,5-triphenyltetrazolium chloride (TTC) [31 (link)]. Lettuce root tips (about 10 mm long) were incubated with a 0.6% (w/v) TTC in 0.06 M Na2HPO4/KH2PO4 buffer (pH = 7.4) containing 0.05% (v/v) Tween 20 for 30 min. Under the influence of dehydrogenases, the colorless TTC is transformed into red–pink triphenylformazan (TPF). The microscopic preparations were observed in visible light under a microscope (Carl Zeiss Axioskop 20, Jena, Germany), and images were captured using a digital camera (Nikon DS-Fi1, Nikon Inc., Tokyo, Japan).
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10

HER2 Gene Amplification Assessment by FISH

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HER2 gene amplification using the PathVysion fluorescence in situ hybridization (FISH) assays (Abbott Molecular, Inc.) is described elsewhere (12 (link)). In brief, rehydration of paraffin sections and protease digestion was followed by hybridizing with fluorescent-labeled probes for HER2 gene and alpha-satellite DNA for chromosome 17, and counterstaining with 4’−6’-diamidino-2’-phenylindole. Staining was visualized with an Axioskop 20 fluorescence microscope (Carl Zeiss, Inc., Oberkochen, Germany). For each tumor, at least 20 nuclei were scored for both HER2 gene copy number and chromosome 17 centromere numbers. The presence or absence of HER2 gene amplification was determined according to standard guidelines (12 (link)).
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