The largest database of trusted experimental protocols

13 protocols using purecol type 1 collagen

1

Extracellular Matrix Coating Optimization

Check if the same lab product or an alternative is used in the 5 most similar protocols
Six well culture plates were coated with 0.05% gelatin type B (Sigma Aldrich, G1393) for 45 min at 37°C. Alternatively, plates were coated with 0.05 mg/mL PureCol Type I collagen (Advanced BioMatrix, #5005) or 1.58 μg/mL fibronectin and were incubated overnight at 37°C. Plates were then rinsed with PBS (pH 7.4) and dried under UV sterilization.
+ Open protocol
+ Expand
2

Collagen-Mediated Myoblast Apoptosis Assay

Check if the same lab product or an alternative is used in the 5 most similar protocols
Coverslips were coated with 0.1 mg/mL Purecol Type I collagen (Advanced BioMatrix, #5005) and were incubated overnight at 37°C. Coverslips were then rinsed with PBS (pH 7.4) and allowed to dry. C2C12 myoblasts were seeded onto the coverslips (100,000 cells per well) and transfected the next day with si-RNAs against the control luciferase reporter or si-Snap23 #2 (MSS209236). For myoblasts, the cells were maintained in growth medium for 48h after transfection. For myotubes, the cells were cultured in differentiation medium for four days. Cells were washed briefly with PBS (pH 7.4), fixed in 4% paraformaldehyde in PBS (pH 7.4) for 15 min at room temperature, permeabilized in 0.5% Triton X-100 in PBS (pH 7.4) for 20 min at room temperature, and washed briefly with deionized H2O. As a positive control, cells were incubated with DNase I (Invitrogen, #18068015) for 30 min at room temperature then washed briefly with deionized H2O. The Click-iT Plus TUNEL Assay kit (Invitrogen, C10617) was used to stain apoptotic cells according to the manufacturer’s protocol. Cells were then stained with 2 μM DAPI (Invitrogen, D1306) for 5 min at room temperature. Cells were washed three times (for 5 min each) with 3% BSA in PBS (pH 7.4) and then imaged by confocal microscopy.
+ Open protocol
+ Expand
3

Experimental Validation of ColGen-GA Sequences

Check if the same lab product or an alternative is used in the 5 most similar protocols
Several de novo sequences from the ColGen-GA model were selected for synthesis and experimental validation. These CPs were synthetized by GeneScript Biotech (95% purity and trifluoroacetic acid removal). As the triple helix–forming control, commercially available bovine type I collagen was used (PureCol TypeI Collagen, catalog no. 5005; AdvancedBiomatrix). Table 1 summarizes the peptide naming scheme, amino acid composition, and experimentally measured Tm values.
+ Open protocol
+ Expand
4

Extracellular Matrix Stiffness Effects

Check if the same lab product or an alternative is used in the 5 most similar protocols
As matrices with different surface micro-stiffnesses, we used 6-well CytoSoft® plates with two different micro-stiffnesses (2 kPa & 16 kPa) were coated with PureCol® Type I collagen, following manufacturer's instructions (Advanced Biomatrix, San Diego, CA, USA). Cells were seeded at a cell density of 2 × 105 cells/well for 48 h. Samples were collected for quantitative real time-polymerase chain reaction (qRT-PCR) or for western blotting analysis.
+ Open protocol
+ Expand
5

Muscle Stem Cell Adhesion Assay

Check if the same lab product or an alternative is used in the 5 most similar protocols
Freshly isolated MuSCs were plated on CytoSoft Imaging 24-well Plates (2 kPa: 5185-1EA, 32 kPa: 5188-1EA; Advanced BioMatrix) coated with PureCol Type I Collagen (No. 5005-100ML; Advanced BioMatrix), based on the manufacturer’s instructions.
+ Open protocol
+ Expand
6

Culturing Primary Airway Epithelial Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Both isolated primary PRECs and commercially acquired HRECs (ATCC, PCS-300-010, Lot-70002486) were subcultured on cell/tissue culture flasks or plates (Greiner Bio-One North America Inc, Monroe, NC, USA), pre-coated with PureCol® Type I collagen (40 µg/mL/4 mm2; Advanced BioMatrix, Inc., San Diego, CA, USA), at a density of ~20,000 cells/ cm2. Both PRECs and HRECs were propagated in ATCC airway epithelial cell basal medium (ATCC® PCS-300-030™) supplemented with 500 mg/mL HSA, 0.6 mM linoleic acid, 0.6 mg/mL lecithin, 6 mM L-Glutamine, 0.4% Extract P, 1.0 mM epinephrine, 5 mg/mL transferrin, 10 nM 3,3′,5-Triiodo-L-thyronine (T3), 5 mg/mL hydrocortisone, 5 ng/mL rh epidermal growth factor (EGF), 5 mg/mL rh insulin, Pen-Strep and Amp-B (growth media). Cells were dissociated with 0.5X TrypLETM express enzyme (Thermo Fisher Scientific) and neutralized using 50% heat-inactivated FBS (EquaFetal™, Atlas Biologicals), mixed in LHC basal medium (Thermo Fisher Scientific). Specifically, primary cells used in this study corresponded to passage 16 for PRECs and 9 for HRECs.
+ Open protocol
+ Expand
7

Cell Response to Extracellular Matrix Stiffness

Check if the same lab product or an alternative is used in the 5 most similar protocols
As matrices with different surface micro-stiffnesses, we used 6-well CytoSoft® plates with different micro-stiffnesses (0.2 kPa, 0.5 kPa, 0.8 kPa, 2 kPa, 8 kPa, 16 kPa, 32 kPa and 64 kPa) were coated with PureCol® Type I collagen, following manufacturer’s instructions (Advanced Biomatrix, San Diego, CA, USA). Cells were seeded at a cell density of 1 × 105 cells/well for 48 h. Samples were collected for quantitative real time-polymerase chain reaction (RT-PCR) or for western blotting analysis (see below).
+ Open protocol
+ Expand
8

Evaluation of Signaling Pathways in Cell Culture

Check if the same lab product or an alternative is used in the 5 most similar protocols
GA was purchased from Calbiochem (San Diego, CA, USA). It was dissolved in 100% DMSO to prepare a stock solution. Trypsin, fetal bovine serum, penicillin, streptomycin, and DMEM/F-12 Ham were purchased from Invitrogen (Carlsbad, CA, USA). Protease inhibitor cocktail was purchased from Hoffman-La Roche Ltd. (Basel, Switzerland). The BrdU cell proliferation assay kit and enhanced chemiluminescence ECL solution were obtained from Calbiochem (San Diego, CA, USA). Collagen type I (PureCol) was purchased from Advanced BioMatrix (Fremont, CA, USA). Primary antibodies (rabbit polyclonal), including anti-p-ERK1/2 (Thr202/Tyr204), anti-ERK1/2, anti-p-AMPK (Thr172), anti-AMPKα, anti-p-S6K (Thr421/Ser424), anti-S6K, anti-β-actin, and anti-rabbit IgG HRP-linked antibody, were purchased from Cell Signaling (Beverly, MA, USA).
+ Open protocol
+ Expand
9

Isolation and Culture of Primary Lymphatic Endothelial Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Primary LN-LECs were isolated and cultured as previously described [10 (link)]. In brief, skin-draining LNs (popliteal, inguinal, axillary, brachial and auricular) were isolated from WT and CD112 KO mice. Digestion was performed in RPMI medium supplemented with 0.25 mg/mL Liberase DH (Roche, Basel, Switzerland) and 200 U/mL DNase I (Sigma-Aldrich) for 1 h at 37 °C. Subsequently, cell suspensions were filtered through 70 µm cell strainers and cultured on cell culture dishes pre-coated with 10 µg/mL collagen type I (PureCol, Advanced BioMatrix, Carlsbad, CA, USA) and 10 µg/mL fibronectin (Millipore, Burlington, MA, USA) in Minimal Essential Medium (MEM)-alpha medium, which was supplemented with 10% FBS and 1× penicillin/streptomycin (all from Gibco). Once the cells reached >80% confluency (typically on days 5–7), the plates were a mixture of lymph node stromal cells (LNSCs), fibroblastic reticular cells (FRCs) and LECs. LNSCs were detached with Accutase, for 4–5 min at 37 °C, washed and purified using CD31+ microbeads (Miltenyi Biotech, Bergisch Gladbach, Germany). Isolated LECs were seeded on collagen and fibronectin-coated cell culture dishes and kept up to 6 passages after isolation.
+ Open protocol
+ Expand
10

Primary Fibroblast Culture and TGFβ1 Stimulation

Check if the same lab product or an alternative is used in the 5 most similar protocols
Primary fibroblasts were cultured in DMEM Glutamax medium (Gibco) supplied with 10% fetal calf serum, 100 U/mL penicillin, 100 mg/mL streptomycin and 100 mg/L pyruvate in standard culture conditions. Medium was partially refreshed (50%) every third day. Cells were used in experiments starting from passage 5. Cells from 3 donors were cultured on plastic, whereas cells from 1 donor were cultured either on plastic or on collagen (PureCol collagen type I (Advanced BioMatrix, Carlsbad, CA, USA)). For stimulation, TGFβ1 (Biolegend, San Diego, CA, USA) was used and this stimulation was also partially refreshed (50%) every third day.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!