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4 protocols using ff458 di02 25x36

1

Cryogenic Confocal Microscopy of Fluorescent Samples

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The samples were measured in a liquid helium flow cryostat (Janis, SVT‐200‐5) that can reach a working temperature of 1.3 K. With an objective (0.85 NA, Edmund Optics) immersed in liquid helium, the cryostat forms part of a home‐built confocal microscope. A Ti:sapphire laser (M‐squared SolsTiS) in combination with a frequency‐doubling module (M‐squared ECD‐X) was used as a narrow bandwidth (<1 MHz) tunable excitation source, operating in the 440–460 nm range. The output wavelength of the laser was measured continuously with a wavemeter (High Finesse WS6‐200), with resolution of a few MHz. A dichroic mirror (Semrock, FF458‐Di02‐25x36) was used to separate fluorescence from the excitation light and further filtering was done by a long‐pass filter (Chroma, ET460lp). The laser beam was scanned over the sample by a scanning mirror (Newport, FSM‐300‐01) and fluorescence was detected by an avalanche photodiode (Excelitas, SPCM‐AQRH‐16). Fluorescence spectra were recorded with a Horiba iHR320 spectrometer coupled to a liquid‐nitrogen‐cooled Symphony II CCD detector. The excitation intensity was measured with a power meter (Newport 1830‐C), before the laser beam entered the cryostat.
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2

Fluorescence and Luminescence Spectroscopy

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For the measurement of fluorescence spectra, HeLa cells expressing CFP alone, YFP alone, or a biosensor were plated onto a 35 mm glass-based dish. Cells were observed with an inverted microscope (IX81; Olympus, Tokyo) equipped with an objective lens (UPLAPO 100×/1.35NA oil objective; Olympus). CFP were excited by an FF02-438/24 (Semrock) excitation filter and an FF458-Di02-25x36 (Semrock) dichroic mirror. YFP were excited by an S492/18X (Chroma) excitation filter and a glass dichroic mirror (Olympus). Fluorescence spectra were recorded at 2 nm intervals by using a PMA-12 photonic multichannel analyzer (Hamamatsu Photonics, Hamamatsu, Japan). For the measurement of luminescent spectra, HeLa cells expressing a biosensor were trypsinized and suspended in M199 (ThermoFisher Scientific) containing 3% FBS and 20 mM HEPES. To the cell suspension, 20 μM coelenterazine-h or 3 μM furimazine was added to record luminescence spectra by PMA-12. The obtained fluorescence and luminescence spectra were used for the estimation of energy transfer efficiencies of the biosensors.
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Fluorescence Microscopy Imaging Protocol

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Flow cells were housed in an aluminum chamber whose temperature was controlled by a circulating water bath. All experiments in this study were performed at 30°C. The sample chamber was mounted on the stage of a Zeiss Axio Observer inverted microscope. Fields of 300–500 cells were observed with a PlanFluor 40X objective. The cell sample was excited by a 75W xenon source (Zeiss XBO 75), attenuated 1000-fold by a neutral density filter, and transmitted through an excitation bandpass filter (Semrock FF01-438/24-25) and a dichroic mirror (Semrock FF458-Di02-25X36). The epifluorescent emission from the cells was split by a second dichroic mirror (Chroma 515DCXR) into “< 515 nm” and “> 515 nm” wavelength channels, which were measured by photon-counting photomultipliers (Hamamatsu H7421-40) after passing through CFP and YFP emission bandpass filters (Semrock FF01-483/32-25 and FF01-542/27-25), respectively. The photon counts from each channel were acquired by a data acquisition board (National Instrument PCIe-6251) and recorded in one-second bins by a computer via LabView program (National Instrument).
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4

FRET Imaging Protocols for Live Cell Analysis

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FRET images were obtained and processed under essentially the same conditions and procedures as previously described (Aoki and Matsuda, 2009) . Briefly, cells were imaged with an IX83 inverted microscope (Olympus, Tokyo, Japan) equipped with a UPlanFL-PH 10x/0.3 (Olympus), a UPlanSApo 20x/0.75 (Olympus), or a UPlanSApo 40x/0.95 objective lens (Olympus), a DOC CAM-HR CCD camera (Molecular Devices, Sunnyvale, CA), a Spectra-X light engine (Lumencor Inc., Beaverton, OR), an IX3-ZDC laser-based autofocusing system (Olympus), an electric XY stage (Sigma Koki, Tokyo, Japan), and a stage top incubator (Tokai Hit, Fujinomiya, Japan). The filters and dichromatic mirrors used for time-lapse imaging were as follows: for FRET imaging, a 438/24 excitation filter (incorporated in the Spectra-X light engine), a FF458-Di02-25x36 (Semrock, Rochester, NY) dichromatic mirror, and FF01-483/32-25 (Semrock) and FF01-542/27-25 (Semrock) emission filter for CFP and FRET, respectively. For mCherry and mScarlet-I imaging, a 575/25 excitation filter, a glass dichromatic mirror (Olympus), and FF01-624/40-25 (Semrock) emission filters were used.
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