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Image gauge version 3

Manufactured by Fujifilm
Sourced in Japan

Image Gauge version 3.2 software is a digital image analysis tool developed by Fujifilm. The software is designed to provide precise measurements and analysis of digital images. It offers a range of features for image processing, analysis, and data management.

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7 protocols using image gauge version 3

1

Immunoblotting Analysis of ABCA4 Protein

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Protein samples were electrophoresed on SDS/PAGE (7.5 % gels] and transferred to PVDF membranes. Membranes were blocked with 5% non-fat dried skimmed milk in TBST Tris-buffered saline (TBST: 50 mM Tris and 150 mM NaCl [pH 8.0] with 0.05% Tween 20] for 1 h, then incubated overnight at 4°C with an anti-ABCA4 antibody (sc-65672, Santa Cruz Biotechnology). Ezrin (sc-58758, Santa Cruz Biotechnology) detection was used as a loading control. The blots were then washed and incubated with sheep anti-mouse IgG peroxidase-linked antibody (GE Healthcare). Immunoreactive bands were visualized by SuperSignal West Dura substrate (Thermo Scientific) using a Fuji Film LAS-4000 Plus system with a cooled CCD camera. Image Gauge version 3.2 software (Fuji Film) was used for quantification of the bands. Background was determined in the vicinity of each of the band quantified and the background values subtracted. For experiments involving lysate samples, 80–100 ng of protein was loaded into the gel. For surface biotinylation, 3000–3500 μg was loaded.
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2

Western Blot Analysis of CFTR Protein

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The cells were harvested and solubilized in lysis buffer (described above), supplemented with protease inhibitor cocktail (catalogue 78429, Thermo Scientific). The cell lysates were centrifuged at 14000g for 20 min at 4°C to pellet the insoluble material. The supernatants (50 μg of proteins) were subjected to 10% SDS-PAGE and immunoblotting, followed by enhanced chemiluminescence (SuperSignal West Dura Extended Duration Substrate, catalogue 34075, Thermo Scientific). The chemiluminescent signal on the polyvinylidene difluoride (PVDF) membrane (Bio-Rad) was directly captured by a FujiFilm LAS-4000 Plus system with a cooled CCD camera. CFTR protein was detected with monoclonal anti-human CFTR (217; 1:1,000) antibody (provided by Dr. John Riordan, University of North Carolina). Ezrin, used as a loading control, was detected with monoclonal antibody (1:10,000; Santa Cruz Biotechnology). Mouse monoclonal antibodies directed against VCP (1:500), HDAC7 (1:1000), AHSA1 (1:1000), Hsp90 (1:1000), Hsp70 (1:1000), Hsp40 (1:1000), Hsp27 (1:500) and a rabbit polyclonal antibody specific for HDAC6 (1:500) were used. Image Gauge version 3.2 software (Fuji Film) was used to quantify the bands.
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3

Extraction and Quantification of CFTR and STX8 Proteins

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The cells were harvested using lysis buffer (50 mM NaCl, 150 mM Tris-HCl, pH 7.4, 1% Nonidet P-40) with protease inhibitors (Halt protease inhibitor cocktail, Thermo Scientific), and proteins were extracted by rotation of the cell lysates for 30 min at 4°C. The cell lysates were then centrifuged on a high-speed tabletop centrifuge for 15 min, and the supernatants were collected to perform western blotting. CFTR was detected with IgG2b 596 (596 obtained from Dr. Jack Riordan at the U. of North Carolina at Chapel Hill), diluted 1:1000. STX8 was detected using a mouse monoclonal anti-STX8 antibody (BD Transduction Laboratories 611352). GAPDH protein was used as the loading control and detected with mouse monoclonal anti-GAPDH antibody (Santa Cruz Biotechnology). Peroxidase-labeled sheep anti-mouse IgG (Amersham) was used as the secondaiy antibody. The signal was enhanced with SuperSignal West Dura Extended Duration Substrate (Thermo Scientific). Chemoluminescence was captured by a Fuji Film LAS-4000 plus system with a cooled CCD camera. Quantification was carried out within the linear range, using Image Gauge version 3.2 software (Fuji Film).
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4

CFTR Protein Quantification by Western Blot

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The cells were harvested using lysis buffer (50 mM NaCl, 150 mM Tris-HCl, pH 7.4, and 1% Nonidet P-40) with protease inhibitors (Roche Applied Science). Lysates were centrifuged for 20 min at 15000 rpm. The pellets were discarded, and the supernatants were collected and used to perform western blotting. CFTR was detected with monoclonal mouse IgG1 217directed against the R domain (aa 807–819), diluted 1:1000, or monoclonal mouse IgG2b 596 (217 & 596 obtained from Jack Riordan at the U. of North Carolina at Chapel Hill) against the NBD2 (aa 1204–1211), diluted 1:1000. Ezrin protein was used as the loading control detected by monoclonal mouse antibody (Santa Cruz). As secondary antibody, monoclonal mouse IgG1 (diluted 1:10000; Santa Cruz) was used. The signal was enhanced with Pierce ECL Western Blotting Substrate. Chemoluminescence was captured by a Fuji Film LAS-4000 plus system with a cooled CCD camera. Quantification was carried out within the linear range using Image Gauge version 3.2 software (Fuji Film).
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5

Extraction and Quantification of CFTR and STX8 Proteins

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The cells were harvested using lysis buffer (50 mM NaCl, 150 mM Tris-HCl, pH 7.4, 1% Nonidet P-40) with protease inhibitors (Halt protease inhibitor cocktail, Thermo Scientific), and proteins were extracted by rotation of the cell lysates for 30 min at 4°C. The cell lysates were then centrifuged on a high-speed tabletop centrifuge for 15 min, and the supernatants were collected to perform western blotting. CFTR was detected with IgG2b 596 (596 obtained from Dr. Jack Riordan at the U. of North Carolina at Chapel Hill), diluted 1:1000. STX8 was detected using a mouse monoclonal anti-STX8 antibody (BD Transduction Laboratories 611352). GAPDH protein was used as the loading control and detected with mouse monoclonal anti-GAPDH antibody (Santa Cruz Biotechnology). Peroxidase-labeled sheep anti-mouse IgG (Amersham) was used as the secondaiy antibody. The signal was enhanced with SuperSignal West Dura Extended Duration Substrate (Thermo Scientific). Chemoluminescence was captured by a Fuji Film LAS-4000 plus system with a cooled CCD camera. Quantification was carried out within the linear range, using Image Gauge version 3.2 software (Fuji Film).
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6

RNA Microinjection in Xenopus Oocytes

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RNA microinjection into Xenopus oocytes was performed as previously described (39 (link),40 (link)). To prepare BSA-NES and BSA-mut, the PKI NES peptide (CELALKLAGLDIN) or a mutant peptide (CELALKAAGADIN) was conjugated to BSA as described previously (19 (link)). Analysis and quantitation of RNA bands were performed with BAS-2500 (Fujifilm) and Image Gauge Version 3.45 (Fujifilm).
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7

Western Blot Analysis of Signaling Proteins

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Western blot analysis was carried out as previously described (Tomimaru et al., 2013a (link)). In brief, immunoblots were probed with primary antibodies generated against β-catenin, β-actin (Cell Signaling Technology, Beverly, MA), cyclin D1, and PCNA (Santa Cruz Biotechnology, Inc., Santa Cruz, CA) and detected with HRP-labeled anti-mouse or anti-rabbit IgG (Amersham Pharmacia Biotech, Buckinghamshire, UK) using SuperSignal West Femto Maximum Sensitivity Substrate (Thermo Scientific, Rockford, IL). Positive signals were captured by the Image analyzer LAS-1000 plus (Fujifilm, Tokyo, Japan) and the band intensity of protein was determined using Image Gauge version 3.45 (Fujifilm).
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