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4 protocols using rabbit anti rfp antibody

1

ORFV ORF120 Interaction with G3BP1

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The DUAL membrane yeast two-hybrid system constructed by HiTech (Shanghai, China) was applied to screen ORFV ORF120 interaction proteins. The experimental procedures were carried out according to the manufacturer’s instructions. To investigate the interaction of the ORFV ORF120 protein and host factor G3BP1, OFTu cells were cotransfected with pIRES-puro3-EGFP120 and pCMV-N-myc-G3BP1 or either empty vector. The cells were harvested 24 h posttransfection and lysed. Protein extracts of the transfected cells were immunoprecipitated with mouse anti-myc antibody (number 60003-2-Ig; Proteintech) or mouse anti-GFP (number 66002-1-Ig; Proteintech). The antigen/antibody complex was incubated with protein A/G agarose beads (Thermo Fisher). Finally, the immunoprecipitates were washed three times with lysis buffer and then subjected to Western blotting. Furthermore, immunoprecipitation of G3BP1 was performed on OFTu cells infected with RFP-tagged ORF120 revertant virus using a rabbit anti-RFP antibody (number ab152123; Abcam), and the pcDNA3.1-RFP-Becline 1 plasmid was used as a control.
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2

Evaluating shRNA Knockdown Efficiency

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Western blots were used to examine shRNA knockdown efficiency. N2A cells were co-transfected with the constructs that express Flag-tagged FlRT3 or Flag-tagged CDKN1C and the corresponding shRNAs. After 24 h incubation, untransfected and transfected cells were harvested and lysed for protein extraction. Then the protein extract was run on 10% SDS PAGE gels. Proteins were then transferred to a PVDF membrane. The membranes were treated with blocking reagent (3% bovine serum albumin) for 1 h before incubated with the rabbit anti-RFP antibody (Abcam) overnight in a cold room. After several washes, the membranes were incubated with the secondary antibody (goat anti-rabbit immunoglobulins/HRP), washed again, and developed with the SuperSignal West Femto Maximum Sensitivity Substrate (Thermo Fisher Scientific, 34096). Images were collected using a Gel Doc XR+ Gel Documentation System (Bio-Rad) machine. The same membranes were then washed and incubated with the mouse Flag-m2 antibody (Sigma-Aldrich) overnight. On the second day, the membranes were washed, incubated with the secondary antibody (rabbit anti-mouse immunoglobulins/HRP), washed again, developed and exposed in the Gel Doc XR+ Gel Documentation System (Bio-Rad) machine. Details of the antibodies used are provided in Table S4.
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3

Immunohistochemical Profiling of Spinal Cord and DRG

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Mice were anesthetized with pentobarbital sodium and transcardially perfused with saline followed by 4% paraformaldehyde. Vibratome sections (30 μm) of the spinal cord and brain or Cyrostat-sections (16 μm) of the L4/L5 DRG were immunostained using standard protocol with goat anti-NR1 antibody (Santa Cruz, 1:100), biotinylated isolectin B4 antibody (vector laboratories, 1:200), rabbit anti-CGRP antibody (Calbiochem, 1:500), goat anti-CGRP antibody (Abcam, 1:500), mouse anti-NF200 antibody (Sigma-Aldrich, 1:200), rabbit anti-PSD-95 antibody (Abcam, 1:500), rabbit anti-synaptophysin antibody (Abcam, 1:500), goat anti-GFP antibody (Rockland, 1:500), rabbit anti-RFP antibody (Abcam, 1:500), mouse anti-Flag (Abbkine, 1:800). The number of immunoreactive neurons per DRG section was counted and numbers were averaged over 10 sections per mouse and 4 mice per treatment group. All images were captured with Olympus Fluoview version 3.1 software in an Olympus confocal microscope. See also the list of antibodies used in Supplementary Table 1.
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4

Immunohistochemical Analysis of RFP in Mice

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Mice were perfused with 4% paraformaldehyde (PFA) following a standard protocol. The brains were collected and post-fixed in 4% PFA at 4 °C overnight, followed by incubation in 10% and 30% sucrose in PBS at 4 °C for 24 h. Coronal sections (60 μm thickness) were made using a cryostat (CM3050S; Leica). Free-floating sections were treated by hydrogen peroxide in methanol (1:4) solution at − 20 °C for 20 min to inactivate endogenous peroxidase activity. After washing with PBS-T (PBS containing 0.2% Tween 20) three times, sections were incubated with blocking buffer [2% bovine serum albumin (BSA) in PBS-T] for 30 min at room temperature. Sections were then incubated with a rabbit anti-RFP antibody diluted in the blocking buffer (1:500) (Abcam) overnight at 4 °C. Incubation with a horseradish peroxidase (HRP)-conjugated anti-rabbit IgG (1:500) (Jackson ImmunoResearch) was for 3 h at room temperature. TSA kit (PerkinElmer) was used for signal amplification. DAPI (4′,6-diamidino-2-phenylindole, dihydrochloride) (1:10,000) (Sigma–Aldrich) was used for nuclear counterstaining. Labeled sections were imaged using an Olympus confocal microscope equipped with a digital camera.
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