The largest database of trusted experimental protocols
Sourced in United States

TOMM20 is a protein marker that is commonly used to detect the presence and distribution of the translocase of outer mitochondrial membrane 20 protein in various cell and tissue types. It is a core component of the mitochondrial protein import machinery and plays a crucial role in the translocation of proteins into the mitochondria.

Automatically generated - may contain errors

12 protocols using tomm20

1

Mitochondrial Protein Characterization by Western Blotting

Check if the same lab product or an alternative is used in the 5 most similar protocols
Western blotting was performed as described previously (19). Primary antibodies against PINK1 (#6946), PRKN (#4211), TOMM20 (#42406), COX4I1/Cox IV (#4850), MFN1 (#14739), MFN2 (#9482), STUB1/CHIP (#2080 S), SMURF1 (#2174), phospho-ubiquitin (Ser65, #62802), and MAP1LC3B/LC3B (#3868) were purchased from Cell Signaling (Beverly, MA, USA); SQSTM1/p62 (#sc-48402), ACTB (#sc-47778), and SLC5A2/SGLT2 (#sc-393350) from Santa Cruz Biotechnology (Dallas, TX, USA); phospho-ubiquitin (Ser65, ABS1513-I) from Merck; TIMM23 (#611223) from BD Biosciences; MTCO2/Cox II (#ab110258), MUL1 (#ab209263), and SIAH1 (#ab2237) from Abcam (Shanghai, China).
+ Open protocol
+ Expand
2

Characterization of APP and Tau Fragments

Check if the same lab product or an alternative is used in the 5 most similar protocols
Primary antibodies to the following targets were used: APP N585, APP C586 and Tau N368 which specifically recognize the δ-secretase-derived APP and tau fragments respectively, were described previously(Zhang et al., 2014 (link); Zhang et al., 2015 (link)). AEP 6E3 and 11b7 (from Dr Colin Watts, University of Dundee), GST-HRP (Sigma-Aldrich, # GE RPN1236), LAMP1 (Santa Cruz, #5570), GFP (Santa Cruz, #101525), TrkB (Santa Cruz, #377218), myc (Santa Cruz, #M4439), sAPPβ (6A1, IBL, #10321), AT100 (Thermo, #MN1060), BACE1 N terminal (abcam, #ab79921), APP N terminal (22C11, Calbiochem, #MAB348), Aβ 4G8 (Signet, #800709), β-actin (Cell Signaling, #3700), BACE1 C terminal (Cell Signaling, #5606), EEA1 (Cell Signaling, #3288), GGA3 (Cell Signaling, #8027), Histone H3 (Cell Signaling, #4499), TOMM 20 (Cell Signaling, #42406), ERp57 (Cell Signaling, #2881), see details in Table S2. Mouse and human Aβ1–40 and Aβ1–42 ELISA kits were purchased from Invitrogen, recombinant AEP was purchased from Novoprotein.
+ Open protocol
+ Expand
3

Quantitative Mitochondrial Immunofluorescence

Check if the same lab product or an alternative is used in the 5 most similar protocols
Immunofluorescence was performed on primary hepatocytes as previously described10 (link). Two different primary antibodies were used, Tomm20 (Cell Signaling, Cat#42406) and AIF (Cell Signaling, Cat#5318), and incubated overnight at 4°C. Alexa-Fluor 555-conjugated secondary antibodies (1:500, Thermo Fisher Scientific) were added for 1 h at room temperature. Slides were mounted in Mowiol 4-88 mounting medium (Sigma-Aldrich). Images were acquired using a filterless laser-scanning confocal microscope (Leica TCS SP5) using excitation wavelengths of 488 nm for green fluorescence (autofluorescence), 561 nm for red fluorescence (immunofluorescence), and 405 nm for DAPI (Sigma) nuclear labeling. Quantifications of Tomm20 and AIF fluorescence intensity per cell and per field of view were measured by processing raw data with NIS-Elements v.5.2 digital imaging analysis software (Nikon Instruments) for segmentation and precise quantification, implementing the general-analysis tool-box. AIF and Tomm20 mitochondrial fluorescence intensity levels were plotted as mean ± SEM values of each field of view. All the images were further processed with Photoshop CS6 (Adobe) software. For the statistical analysis of fluorescence intensity levels, the Mann–Whitney paired comparison was used.
+ Open protocol
+ Expand
4

Comprehensive Protein Expression Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
AR(rabbit monoclonal, 1:1000, #5153), PSA/KLK3(rabbit monoclonal, 1:1000, #5365), TOMM20(rabbit monoclonal, 1:1000, #42,406), ATG5(rabbit monoclonal, 1:1000, #12994S), LC3I/II(rabbit monoclonal, 1:1000, #12,741), Akt (rabbit monoclonal, 1:1000, #4691), Phospho-Akt (Ser473)(rabbit monoclonal, 1:1000, #4060), Phospho-Akt (Thr308)(rabbit monoclonal, 1:1000, #13,038), Nanog(rabbit monoclonal, 1:1000, #4903), Sox2(rabbit monoclonal, 1:1000, #3579), ALDH1A1(rabbit monoclonal, 1:1000, #36671S) and VDAC(rabbit monoclonal, 1:1000, #4661) antibodies were purchased from Cell Signaling Technology (CST). NCAM1(rabbit polyclonal antibody, 1:1000, A7913), β-Actin(mouse polyclonal, 1:5000, AC004) and α-Tublin(mouse polyclonal, 1:5000, AC012) antibodies were purchased from ABclonal Technology (Upper Heyford, UK). NSE (rabbit monoclonal, 1:1000, ab180943) and Syp (Rabbit monoclonal, 1:1000, ab184176) were purchased from Abcam (Shanghai, China). ALDH1A1(mouse monoclonal antibody, 1:500,sc-166362), TOMM70(mouse monoclonal antibody, 1:500, sc-390545),AR(rabbit polyclonal, 1:1000, Sc-815X) antibodies were purchased from Santa cruz. E-cadherin (rabbit polyclonal, 1:1000, GTX100443),BRN2(rabbit polyclonal, 1:1000, GTX114650) and N-cadherin (rabbit polyclonal, 1:1000, GTX127345) were purchased from Genetex.
+ Open protocol
+ Expand
5

Immunostaining of Hippocampal Neurons

Check if the same lab product or an alternative is used in the 5 most similar protocols
PFA (4%) was used for fixation of primary Hippocampal neurons. Neurons were then permeabilized with 0.5 % Triton and blocked with 5% bovine serum albumin (BSA) for 1 hour at room temperature (RT), and incubated at room temperature for 2 hours or overnight at 4°C with the following primary antibodies: MPC1 antibody (1:500, Sigma HPA045119) guinea pig vGLUT1 (1:500, Sigma AB5905); TOMM20 (1:500, Cell Signaling Technology 42406S). Coverslips were then incubated with the following secondary antibodies: anti-rabbit Alexa-fluor568 (1:500, Thermo FisherA21428) and anti-mouse Alexa-fluor488 (1:500, Thermo Fisher A11059) for 1 hour at RT and mounted with anti-fade mounting media (Thermo Fisher P36965), and kept at 4°C until imaged. Confocal images were collected on a Zeiss LSM 880 Confocal Microscope at the Washington University Center for Cellular Imaging which was purchased with support from the Office of Research Infrastructure Programs (ORIP), as part of the NIH Office of the Director under grant OD021629.
+ Open protocol
+ Expand
6

Airway Smooth Cell Characterization

Check if the same lab product or an alternative is used in the 5 most similar protocols
Primary human airway smooth cells were purchased from Lonza Pharma (Basel, Switzerland) and Biotech Bioscience Solution (Köln, Germany). The available tissue donor’s clinical data is presented in Table 1.
The 1R6F research cigarettes were obtained from the Kentucky Tobacco Research and Development Center (University of Kentucky, Lexington, KY, USA).
Antibodies for ERK1/2 and p-ERK1/2 (Thr202/Tyr204), beclin1, LC3A/B, p62, MTCO4, TOMM20, and GAPDH were from Cell Signaling Technology (Beverly, MA, USA), and LAMP1, MTCO2, PGC-1α, EEA1 Collagen1, α-SMA, from Abcam (Cambridge, UK), cytochrome C was from BD Bioscience (Allschwil, Switzerland), fibronectin and fluorescents dye DAPI, Alexa-488, Alexa-546, Mitotracker DeepRed, and Lysotracker Green were from ThermoFisher Scientific (Waltham, MA, USA). More details of the antibody and the concentrations used are summarized in Table 2 below.
+ Open protocol
+ Expand
7

Protein Expression Analysis of Rev-erbα in MEFs

Check if the same lab product or an alternative is used in the 5 most similar protocols
Western blotting was used to measure relative protein levels. Total protein was isolated from Rev-erbα WT, KO, and SD MEFs. Lysate was mixed with β-mercapaethanol, boiled, run on a 4–12% Sodium Dodecyl Sulfate Polyacrylamide Gel (Invitrogen, Carlsbad, CA, USA), and transferred to a PVDF membrane. Membranes were incubated with the following primary antibodies and dilutions: Rev-erbα (#13,418, Cell Signaling Technologies, Danvers, MA monoclonal rabbit antibody, 1:1000), TOMM20 (#42406S Cell Signaling Technologies, Danvers, MA, USA, 1:5000), DMPO (gift of Ronald Mason, National Institute for Environmental Health Sciences, Research Triangle Park, NC, USA), SOD2 (#06-984, Upstate EMD Millipore, Burlington, MA, USA, 1:1000). β-actin (#ab8227, abcam, Cambridge, MA, USA) and calnexin (#ADI-SPA-860-F, Enzo, Farmingdale, NY, USA) were used as loading controls.
+ Open protocol
+ Expand
8

Western Blot Analysis of Mitochondrial Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Western blotting was conducted with primary antibodies against PRDX3 (Abcam, Ltd., Cambridge, UK), SIRT3 (Cell Signaling Technology, MA, USA), cleaved caspase-3 (Beyotime Institute of Biotechnology, Shanghai, China), TOMM20 (Cell Signaling Technology, MA, USA) and β-actin (Beyotime Institute of Biotechnology, Shanghai, China). Protein quantification was performed using Gel-Pro Analyzer version 4.0 (Media Cybernetics, MD, USA).
+ Open protocol
+ Expand
9

Immunofluorescence analysis of spinal cord

Check if the same lab product or an alternative is used in the 5 most similar protocols
The spinal cord sections and PC12 cells fixed with 4% paraformaldehyde (PFA) were subjected to three washes with PBS. Subsequently, the sections were blocked with 10% goat serum in PBS for 1 h at room temperature and then incubated with the following antibodies overnight at 4 °C: NEUN (1:500; ab104224; Abcam), NRF2 (1:100; MA5-42371; Invitrogen), SOD2 (1:200; 66474-1-IG; Proteintech), NF200(1:200; ab254348; Abcam), Tomm20 (1:200; 42,406; Cell Signaling Technology), Drp1 (1:100; 8570; Cell Signaling Technology), and HO1 (1:200; 66743-1-IG; Proteintech). Secondary antibodies, including goat anti-mouse IgG H&L (Alexa Fluor 488, ab6785, Abcam, USA), goat anti-mouse IgG H&L (Alexa Fluor 594, A32727, Thermo, USA), goat anti-rabbit IgG H&L (Alexa Fluor 488, A11070, Thermo, USA), and goat anti-rabbit IgG H&L (Alexa Fluor 594, #8889, CST, USA), were applied for 2 h at room temperature. Finally, the nuclei were stained with Hoechst 33,258 (Beyotime) at room temperature for 15 min. For TUNEL staining, the sections were cultured in a dark and humid environment at 37 °C for 2 h using the TUNEL Apoptosis Assay Kit (C1088, Beyotime) in accordance with the manufacturer's instructions. Images were captured using a Leica SP8 Lightning confocal microscope and light microscope (400× magnification; Nikon, Japan), and eight randomly chosen fields of view were selected for each sample.
+ Open protocol
+ Expand
10

Comprehensive Mitochondrial and Apoptosis Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
All Western blotting routine steps were mentioned previously [48 (link)]. Apoptosis antibodies included cleaved poly (ADP-ribose) polymerase (c-PARP), Bcl-xL, Bcl-2, and Bax (Cell signaling; Danvers, MA, USA). Antioxidant signaling antibodies included nuclear factor erythroid 2-related factor 2 (NRF2) (Fine Test; Wuhan, China), catalase (Merck; Darmstadt, Germany), peroxiredoxin 1 (PRX1) (GeneTex; Irvine, CA, USA), and superoxide dismutase 1 (SOD1) (Abcam; Cambridge, UK). Mitochondrial resident protein antibodies included translocase of the inner membrane (TIMM22) (Proteintech; Rosemont, IL, USA) and translocase of outer mitochondrial membrane 20 (TOMM20) (Cell signaling). Mitochondrial biogenesis antibodies (Biorbyt; Cambridge, UK) included RNA polymerase mitochondrial (POLRMT), Tu translation elongation factor, mitochondrial (TUFM), transcription factor B2, mitochondrial (TFB2M), transcription factor A, and mitochondrial (TFAM). Except for antibodies against TFB2M (1:5000) and β-actin (Sigma-Aldrich; St. Louis, MO, USA) (1:10,000), all antibodies were used in 1:1000 dilution.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!