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7 protocols using mouse anti flag monoclonal antibody clone m2

1

Quantifying Calcium-Induced Lysosome Exocytosis

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Immunofluorescence for PKD2 localization and for quantification of the number of exocytic p80 patches was performed as described previously [24] (link), [49] (link). For measurement of calcium-induced lysosome exocytosis, 106 cells were allowed to attach to glass coverslips in HL5-MES medium for 3 hs, then transferred to HL5-MES containing 1 mM CaCl2, incubated between 0 and 8 minutes as indicated, fixed with paraformaldehyde 4%, permeabilized with Triton X-100 (0.08%) and labeled with mouse monoclonal antibody anti-p80.
Mouse monoclonal antibodies against the late endosomal marker p80 (H161), the p25 marker of recycling endosomes, and the plasma membrane H36 protein, as well as a rabbit antiserum against the contractile vacuole marker Rh50 were described previously [50] (link)–[53] (link). F-actin was labeled with TRITC-phalloidin (Sigma-Aldrich). Mouse monoclonal anti-Flag antibody (clone M2) was from Sigma-Aldrich, and fluorescent secondary goat anti-mouse or anti-rabbit IgG from Molecular Probes.
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2

Immunofluorescence Imaging of Transfected HeLa Cells

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After PBS washings, transfected HeLa cells grown on chamber slides were fixed with 4% PFA for 15 min. After PBS washing, cells were incubated in 50/50 acetone/methanol for 20 min. Mouse monoclonal anti-V5 antibody (R960-25, Thermo Fisher Scientific), mouse monoclonal anti-Flag antibody (clone M2, F1804, Sigma), mouse monoclonal anti-GFP antibody (clone 4B10B2, MA5-15349, Thermo Fisher Scientific), and rabbit monoclonal anti-TOM20 (ab186734, Abcam) were incubated at 1/250 for 1 h at room temperature, followed by incubation with a mouse specific Alexa-488 goat antibody (Thermo Fisher Scientific) and rabbit specific alexa-633 conjugated donkey antibody (Thermo Fisher Scientific) 1 h at room temperature in the dark. After washing, slides were mounted with Fluoromount-G imaging medium containing DAPI (Sigma). Imaging was performed using Leica SP5 confocal microscope.
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3

Western Blot Analysis of DNA Repair Proteins

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Anti-XRCC4 rabbit polyclonal antibody [47 (link)], anti-FLAG mouse monoclonal antibody (clone M2; F3165; Sigma-Aldrich; St. Louis, MO, USA), anti-Glyceraldehyde-3-Phosphate Dehydrogenase (GAPDH) mouse monoclonal antibody (clone 6C5; MAB374;) and anti-LIG4 guinea pig polyclonal antibody (gifted by Prof. Miki Shinohara, Kinki University) [36 (link)] were used as the primary antibody at 1/1000 to 1/5000 dilution. As the secondary antibody, horseradish peroxidase-conjugated anti-rabbit immunoglobulins swine polyclonal antibody (P0399; Dako; Glostrup, Denmark), anti-mouse immunoglobulins goat polyclonal antibody (P0447; Dako) or anti-guinea pig immunoglobulins rabbit polyclonal antibody (P0141; Dako) was used at 1/1000 to 1/3000 dilution. The immunocomplexes were developed using WesternSure Chemiluminescent Western Blot Reagent (LI-COR; Lincoln, NE, USA) and the images were captured by C-Digit Blot Scanner (LI-COR). Protein Ladder One Plus, Triple-color (Nacalai Tesque) was used as the molecular weight standard. Other procedures of western blotting followed earlier publications [31 , 32 (link)].
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4

Western Blotting of Viral Particles

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Western blotting was performed as described [30 (link), 36 (link)] using the following antibodies: anti-HA mouse monoclonal antibody (clone 3F10; Roche), anti-Flag mouse monoclonal antibody (clone M2; Sigma-Aldrich), anti-p24 goat antiserum (ViroStat), anti-alpha-tubulin mouse monoclonal antibody (TUBA; clone DM1A; Sigma-Aldrich); anti-hA3G rabbit antiserum (the NIH AIDS Research and Reference Reagent Program catalog number #10201); and anti-CBF-β mouse monoclonal antibody (sc-56751; Santa Cruz). For Western blotting of viral particles, 370 μl of viral supernatant was ultracentrifuged at 100,000 × g for 1 h at 4°C using a TL-100 instrument (Beckman), and the pellet was lysed with 1 × SDS buffer. Transfected cells were lysed with RIPA buffer (25 mM HEPES [pH 7.4], 50 mM NaCl, 1 mM MgCl2, 50 μM ZnCl2, 10% glycerol, 1% Triton X-100) containing a protease inhibitor cocktail (Roche).
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5

Immunofluorescence Analysis of Cytoophidium

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For analysis of cytoophidium, the cells grown in 13-mm round coverslips were fixed with 4% paraformaldehyde and probed with antibodies in an indirect immunofluorescence assay, as previously described (Keppeke et al., 2018 (link); Keppeke et al., 2022 (link)).
Primary antibodies used: rabbit polyclonal anti-IMPDH2 antibody (12948-1-AP, ProteinTech), mouse anti-Myc monoclonal antibody 9E10 (sc-40, Santa Cruz Biotech), and mouse anti-Flag monoclonal antibody clone M2 (F1804, Sigma). Secondary antibodies used: Cy3-conjugated donkey anti-mouse IgG (#715-165-151, Jackson ImmunoResearch) and Alexa Fluor 488-conjugated donkey anti-rabbit IgG (#A-21206, Invitrogen). After immunofluorescence labeling, the cells were covered with VECTASHIELD containing DAPI (Vector Labs, USA), and the images were captured either by a fluorescence microscope with 200 × or 400 × magnification (Axio Imager. M2, Carl Zeiss, Germany) or by a confocal microscope (LSM 800, Carl Zeiss, Germany).
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6

Binding Assays for Leukocidin Subunits

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For binding experiments with LukS-PV, cells transiently transfected with plasmids encoding receptors with an N-terminal FLAG tag (28 (link)) were pre-labeled with a mouse anti-FLAG monoclonal antibody (clone M2, 1:500, Sigma), followed by PE-labeled goat-anti-mouse antibody (1:80, Dako). For experiments with HlgC, stably transfected cells were directly used for subsequent binding. After incubation with the protein on ice for 30 min in a volume of 50 μL, cells were washed and incubated with a FITC-conjugated mouse anti-his monoclonal antibody (1:80, LifeSpan Biosciences). Binding was detected using flow cytometry, and at least 10,000 cells were analyzed. Analysis of binding to transiently transfected cells was limited to receptor-positive cells. Binding of the S-components was expressed as the percentage of mean fluorescence in relation to saturated binding of the S-component to human C5aR1 at 31 nM.
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7

Antibody Characterization for Immunofluorescence and Western Blot

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The following antibodies were used for immunofluorescence assays (IFA) and western blot (WB) analysis at the indicated dilutions: mouse anti-HA monoclonal antibody HA.11 (Covance; 1:500 WB); rabbit polyclonal anti-HA SG77 (ThermoFisher; 1:500 IFA and WB); mouse anti-Flag monoclonal antibody clone M2 (Sigma; 1:300 IFA); mouse anti-EXP1 monoclonal antibody (Lisewski et al., 2014 (link)) (1:500 WB); mouse anti-EXP2 monoclonal antibody clone 7.7 (Hall et al., 1983 (link)) (1:500 IFA and WB); rabbit polyclonal anti-SBP1 (Blisnick et al., 2000 (link)) (1:500 IFA); mouse anti-cMYC monoclonal antibody 9E10 (ThermoFisher; 1:166 IFA and WB); rabbit polyclonal anti-Plasmodium Aldolase ab207494 (Abcam; 1:500 WB); rabbit polyclonal anti-RFP R10367 (ThermoFisher; 1:500 WB).
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