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9 protocols using mem alpha

1

Fluorescence-Activated Cell Sorting Protocol

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Cell sorting was performed 3 days following electroporation. Cells were harvested, washed and resuspended in PBS supplemented with 5% BSA containing 1/100 diluted anti-human CD70 and anti-human CD52 (Biolegend). Staining was performed for 15 mins at room temperature in the dark. Subsequently, cells were washed and resuspended in PBS supplemented with 0.5% BSA. During Fluorescence Activated Cell Sorting, cells were collected in MEM-Alpha (Biological Industries) supplemented with 0.5% Heat Inactivated FCS (Sigma) and P/S. Acquisition was performed on a BD FACSAria III (BD Biosciences). After collection, live cells were purified using Lymphocyte Separation Medium (mpbio), washed and cultured in MEM-Alpha (Biological Industries) supplemented with 10%Heat Inactivated FCS (Sigma), 50IU rhIL-2 (Peprotech) and P/S. Purity of the sorted cells can be found in Extended Data Fig. 10.
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2

Fluorescence-Activated Cell Sorting Protocol

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Cell sorting was performed 3 days following electroporation. Cells were harvested, washed and resuspended in PBS supplemented with 5% BSA containing 1/100 diluted anti-human CD70 and anti-human CD52 (Biolegend). Staining was performed for 15 mins at room temperature in the dark. Subsequently, cells were washed and resuspended in PBS supplemented with 0.5% BSA. During Fluorescence Activated Cell Sorting, cells were collected in MEM-Alpha (Biological Industries) supplemented with 0.5% Heat Inactivated FCS (Sigma) and P/S. Acquisition was performed on a BD FACSAria III (BD Biosciences). After collection, live cells were purified using Lymphocyte Separation Medium (mpbio), washed and cultured in MEM-Alpha (Biological Industries) supplemented with 10%Heat Inactivated FCS (Sigma), 50IU rhIL-2 (Peprotech) and P/S. Purity of the sorted cells can be found in Extended Data Fig. 10.
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3

RAW 264.7 Macrophage Cell Culture

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RAW 264.7 macrophage cells (ATCC, TIB-71, Virginia) were cultured in Minimum Essential Medium-α (MEM-alpha, Biological Industries, Israel) containing 10% fetal bovine serum (FBS, Biological Industries, Israel), 100 μg/ml penicillin and streptomycin (Biological Industries, Israel) at 37°C in a humidified atmosphere of 5% CO2. The culture medium was changed every 3 days. Cells (1.5 × 106 cells) were seeded in a small flask (25 cm2, Corning, Israel) for expansion for 3 days, and transferred to a big flask (175 cm2, Corning, Israel) with culture medium.
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4

Isolation and Cryopreservation of Rat MSCs

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Bone marrow was isolated from femurs and tibias of 8 Sprague-Dawley’s rats. MSC were isolated by plastic adhesion, amplified up to 80–90% confluence in a complete medium containing MEM alpha (Biological Industries) supplemented with 10% fetal calf serum (FCS, HyClone) + 1% penicillin streptomycin (Gibco) and 1 ng/mL of bFGF (Peprotech), then pooled at the same ratio for each donor. The cells were frozen in MEMα + 10% Albumin (Vialebex, LFB) + 1% penicillin streptomycin + 10% Dimethylsulfoxide (Sigma Aldrich) and finally preserved in liquid nitrogen. For in vivo experiments, MSC were thawed and seeded at 3000 to 5000 cells/cm2. Medium was changed one day after thawing. When MSC reached 90 to 100% of confluence, they were harvested using trypsine-EDTA (Gibco) and suspended in a sterile syringe at a concentration of 2.106 cells/mL of Ringer lactate solution (Fresinus).
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5

Isolation and Characterization of Human PDLSCs

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Human PDLSCs were isolated from the periodontal tissues of premolars extracted from the Department of Oral Maxillofacial Surgery, School of Stomatology, Shandong University (Jinan, China). Primary PDLSCs were obtained from periodontal tissues which were cut into 2 mm2 pieces. PDLSCs were incubated at 37 °C in a humidified atmosphere containing 5% CO2 in MEM-alpha (Biological Industries, Israel) with 10% fetal bovine serum (FBS, Lonsera, China) at 37 °C in a humidified atmosphere with 5% CO2. Selected surface markers of the PDLSCs, including CD31, CD34, CD45, CD90, CD146, and Stro-1, were analyzed by flow cytometry.
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6

Culturing Human Mesenchymal Stem Cells

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Human-bone-marrow-derived mesenchymal stem cells (hBM-MSCs) (ATCC, Manassas, VA, USA) were cultured in a dedicated complete growth medium: MEM-alpha (Biological Industries, Beit HaEmek, Israel), supplemented with 10% (v/v) FBS and 1% (v/v) penicillin/streptomycin.
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7

Isolation and Cultivation of Gastric Cancer Mesenchymal Stem Cells

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GC tissues were obtained from GC patients treated at the Affiliated People's Hospital of Jiangsu University (Zhenjiang, Jiangsu, China). The study protocol was approved by the Ethics Committee of Jiangsu University. Informed consent forms were obtained from all subjects. GCMSCs were isolated from human GC tissues as previously described 25 (link). Briefly, fresh GC tissues were cut into approximately 1 mm3-sized pieces, which were then adhered to 60 mm cell culture dishes (Corning, USA) and were cultured in MEM-ALPHA (Biological Industries, Israel) supplemented with 10% fetal bovine serum (FBS, Biological Industries) at 37°C with 5% CO2. The culture medium was replaced every 3 days. When the fibroblast-like cells reached 85% confluence, the cells were trypsinized and expanded for up to five passages.
The human GC cell lines SGC-7901, MGC-803, HGC-27, and AGS were obtained from the Chinese Academy of Sciences Type Culture Collection Committee Cell Bank (Shanghai, China). SGC-7901, MGC-803, and HGC-27 were cultured in RPMI-1640 (Biological Industries) with 10% FBS. AGS were cultured in DMEM/F-12 (Biological Industries) with 10% FBS at 37°C with 5% CO2.
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8

Digital Droplet PCR for Dislinkage Analysis

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For digital droplet PCR, whole genomic DNA was extracted from cells using Gentra PureGene Tissue Kit (Qiagen). In order to remove sheared genomic fragments, resulting eluates were further purified using AmpureXP beads (Beckman Coulter) at a 0.5:1 ratio. DNA fragmentation by digestion was performed in reaction, using 66ng of purified genomic DNA and 10U HindIII-HF (NEB) in ddPCR Supermix for Probes (BioRad). Thermo-cycling reaction was performed as per manufacturer recommendation. Sequences for the primers and probes can be found in Supplementary Table 1. Reactions were performed using a QX200 Droplet Digital PCR System (Bio-Rad). To analyze for dislinkage, we used the following equation as per the resulting Quantasoft (BioRad) Linkage (Linkage) and Concentration (CHEX, CFAM) values: %Dislinkage=100(LinkageCHEX+CFAM2x100)
For dislinkage followup, multiple electroporations of treated cells were pooled and then divided in separate wells for collection at each time point. Cells were seeded at 1E6 cells/ml in MEM-Alpha (Biological Industries) supplemented with 10% Heat Inactivated FCS (Sigma) and 50IU rhIL-2 (Peprotech).
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9

Digital Droplet PCR for Dislinkage Analysis

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For digital droplet PCR, whole genomic DNA was extracted from cells using Gentra PureGene Tissue Kit (Qiagen). In order to remove sheared genomic fragments, resulting eluates were further purified using AmpureXP beads (Beckman Coulter) at a 0.5:1 ratio. DNA fragmentation by digestion was performed in reaction, using 66ng of purified genomic DNA and 10U HindIII-HF (NEB) in ddPCR Supermix for Probes (BioRad). Thermo-cycling reaction was performed as per manufacturer recommendation. Sequences for the primers and probes can be found in Supplementary Table 1. Reactions were performed using a QX200 Droplet Digital PCR System (Bio-Rad). To analyze for dislinkage, we used the following equation as per the resulting Quantasoft (BioRad) Linkage (Linkage) and Concentration (CHEX, CFAM) values: %Dislinkage=100(LinkageCHEX+CFAM2x100)
For dislinkage followup, multiple electroporations of treated cells were pooled and then divided in separate wells for collection at each time point. Cells were seeded at 1E6 cells/ml in MEM-Alpha (Biological Industries) supplemented with 10% Heat Inactivated FCS (Sigma) and 50IU rhIL-2 (Peprotech).
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