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15 protocols using cd3 pecy5

1

Antigen-specific B Cell Sorting

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Cryopreserved 107 PBMC were thawed into 1 ml preheated RPMI1640, centrifuged at 300 × g for 5 min, resuspended in 500 μl FACS buffer (PBS + 2% FBS), and incubated with 200 nM his-tagged antigen (gH/gL) for 45 min at 4 °C. The PBMC were then washed two times with 1 ml FACS buffer and resuspended in 100 μl FACS buffer. The PBMC were stained with the following antibodies: CD3-PE-Cy5 (BD Biosciences Cat#555341) at a 1:25 dilution, CD14-PE-Cy5 (eBioscience Cat#15-0149-42) at a 1:50 dilution, CD16-PE-Cy5 (BD Biosciences Cat#555408) at a 1:25 dilution, CD235a-PE-Cy5 (BD Biosciences Cat#559944) at a 1:100 dilution, CD19-APC-Cy7 (BD Biosciences Cat#348794) at a 1:100 dilution, CD20-PE-Cy7 (BD Biosciences Cat#335793) at a 1:200 dilution, IgG-FITC (BD Biosciences Cat#555786) at a 1:25 dilution, and anti-his-PE (BioLegend Cat#362603) at a 1:20 dilution for 30 min at 4 °C. The PBMC were washed three times with 1 ml FACS buffer and resuspended in 500 μl FACS buffer, then subjected to FACS on a BD FACS Aria II (BD Biosciences).
Antigen-positive B cells (CD3-, CD14-, CD16-, CD235a-, CD19+, CD20+, IgG+, PE+) were sorted individually into 96-well PCR vital-plates containing 20 μl first strand buffer (5 μl first strand buffer, 0.5 μl of RNase inhibitor (Invitrogen Cat#10777019), 1.25 μl of 100 μM DTT, 0.06 μl of IGEPAL (Sigma Cat#I8896).
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2

Peripheral Blood Immune Cell Profiling

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Fresh peripheral blood samples were collected from healthy volunteers. The human lung cancer cell line A549 was derived from the passaged cell line preserved in the immunology laboratory of Zunyi Medical University. Tim-3 blocking antibody (AB_1877089) and PD-1 blocking antibody (AB_2820104) were purchased from Biolegend Inc., USA. The cell factors rhIL-4, rhGM-CSF, rhIFN-γ, rhTNF-α, and CD3McAb were purchased from Peprotech Inc., USA. Flow cytometry antibodies CD3-PE-Cy5, CD56-RD1, CD4-FITC, CD8-PC-Cy7, Tim-3-APC, and PD-1-PE were purchased from BD Inc., USA. The 1640 medium was purchased from Thermo Scientific Inc., USA. The GTT-551 H3 medium was from TaKaRa Company, Dalian, China.
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3

Comprehensive Immunophenotyping of Blood Cells

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Erythrocytes from spleen and peripheral blood samples were lysed using NH4Cl (8.4 g/L)/KHCO3 (1 g/L) solution. Mononuclear cells were stained in fluorescence-activated cell sorter (FACS) buffer (phosphate-buffered saline [PBS]/0.2% bovine serum albumin/0.1% sodium azide). Staining was performed for 30 min at 4°C. The following anti-human antibodies were used: CD3-PECy5 (UCHT1), CD4-APCCy7 (RPA-T4), CD8-PECy7 (SK1), CD13-APC (WM15), CD14-PE (M5E2), CD16-PE (B73.1), CD19-APCCy7 (SJ25C1), CD33-APC (WM53), CD34-PE (8G12), CD45-V450, CD45RA-FITC (L48), and CD56-PE (MY31) (all from BD Biosciences, San Jose, CA), and CD38-PECy7 (HIT2), CD49f PerCP-efluor710 (eBioGoH3), and CD90-APC (eBio5e10) (all from eBioscience, San Diego, CA). Data were acquired on a Canto II (BD Biosciences) and analyzed using FlowJo software (Treestar, Ashland, OR).
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4

Characterization of Dendritic Cell Phenotype

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HLA-ABC FITC (MHC I), HLA-DP, DQ, DR-FITC (MHC II), CD80 FITC, CD86 FITC, CD83 PE, CD1a PE, CD14 PE, Langerin PE, E-cadherin PE, CD8-FITC, CD3-PE-Cy5, and CCR7 PE were purchased from BD Biosciences (San Jose, CA). CD40 PE, purified rat IgG2a, goat anti-rat IgG PE, mouse IgG1 FITC, and mouse IgG1 PE were purchased from Biolegend (San Diego, CA). Recombinant human (rhu)-CCL21 was purchased from R&D Systems (Minneapolis, MN); rhu-GM-CSF was purchased from Berlex (Seattle, WA); and rhu-transforming growth factor-β1 (TGFβ1) and rhu-IL-4 were purchased from Biosource (Carlsbad, CA).
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5

Multi-Target Antibody Protocol: Optimizing Immune Responses

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ATOR-1015 (anti-CTLA-4 x anti-OX40 bsAb), anti-OX40 mAb, anti-CTLA-4 (anti-GFP x anti-CTLA-4 bsAb) and IgG1 isotype control (anti-GFP) were developed using the proprietary ALLIGATOR-GOLD® library and FIND® optimization technology (Additional file 1: Supplementary Methods). For flow cytometry analysis of human cells, the following anti-human antibodies were used: CD3-PECy5 (clone SP34–2), CD4-APC-H7 (clone RPA-T4), CD25-BV421 (clone 2A3), CD127-FITC (clone HIL-7R-M21), CD134 (OX40)-PE (clone L106) and CD152 (CTLA-4)-APC (clone BNI3) (all from BD) and anti-human IgG-PE (Jackson Immuno-Research).
For flow cytometry analysis of murine cells, the following anti-mouse antibodies were used: CD25-PerCPCy5.5 (clone PC61.5), CD45-APCeFluor780 (clone 30-F11), NK1.1-FITC (clone PK136) and Foxp3-APC (clone FJK-16 s) from eBioscience, CD3-PE (clone 145-2C11), CD3-PECy7 (clone 145-2C11), CD4-BV510 (clone RM4–5), CD4- PECy7 (clone RM4–5), CD8-PE (clone 53–6.7), CD8-PerCPCy5.5 (clone 53–6.7), CD11b-FITC (clone M1/70), CD19-FITC (clone 1D3), CD107a-APC (clone 1D4B), MHC-II-FITC (clone 2G9), Granzyme B-PE (clone GB11) and FVS450 viability stain from BD.
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6

Flow Cytometric Analysis of BSSL in Leukocytes

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Peripheral blood drawn in vacutainer tubes supplemented with sodium citrate as anticoagulant or freshly prepared buffy coat were used for flow cytometry. The samples (whole blood or buffy coat) were stained with fluorochrome-conjugated mouse anti-human monoclonal antibodies (CD14-BV421, CD15-PE-Cy7 and CD3 PE-Cy5) from BD Biosciences (Franklin Lakes, NJ, USA). Mouse anti-human BSSL mAb AS20 was conjugated to Alexa Fluor 647 (AS20-AF647) using the Alexa Fluor® Antibody Labeling Kit (Molecular Probes by Life Technologies, Thermo Fisher Scientific), according to the manufacturer´s instruction, and used to detect BSSL. Exogenous biotin-labelled BSSL (bio-BSSL) was detected using BD Horizon BB515 Streptavidin (BD Biosciences). To analyze antigens on the cell surface, the protocol for direct immunofluorescence staining of whole blood using a lyse/wash procedure was used, as previously described (www.bdbiosciences.com). To analyze intracellular markers, the cells were first permeabilized using BD FACS™ permeabilizing solution 2 (BD Biosciences) before staining was performed following the manufacturer’s instruction. Flow cytometry was performed on a FACS LSR II (BD Biosciences) and data were analyzed using FlowJo software (BD Biosciences). Leukocyte populations were defined as CD14+ monocytes, CD15+ granulocytes and CD3+ T lymphocytes, respectively.
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7

Expansion and Characterization of NK Cells

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The pNKC were generated as described previously [54 (link)]. Briefly, non-plastic adherent peripheral blood mononuclear cells (PBMC) from healthy individuals were regularly obtained twice weekly and incubated with irradiated RPMI8866 feeder cells (ratio 4:1) in the presence of IL-2 (25 U/ml) for 10 days. Subsequently, purity of NK cells was determined by flow cytometry. Functional experiments were performed with NK cells (CD56+CD3) of more than 90% purity. Flow cytometry antibodies were CD56-FITC and CD3-PeCy5 (BD Biosciences, both diluted 1:25).
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8

Multiparametric Flow Cytometry Analysis

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All flow cytometry reagents were from Biolegend unless otherwise stated. Data was acquired using a LSR-II flow cytometer (BD Biosciences) and analysed using FACS DIVA software (BD Biosciences); Fluorescence Minus One (FMO) controls established gating strategies. Figures were generated using FlowJo software (Tree Star Inc.). Immune cells were further purified by separation by density gradient centrifugation over lymphoprep (Axis Shield Diagnostics) then cells were washed twice with PBS/2% FCS and consecutive centrifugation of 800 × g and 200 × g for 10 minutes.
For flow cytometry, cells were incubated with antibodies for 20 minutes at 4 °C, washed ×2 in PBS/2% FCS and fixed in Fluorofix prior to data acquisition. Antibodies used were CD4-FITC(OKT4), CD8a-PE(HIT8a), CD3-PeCy5(UCHT1), CD56-PeCy7(BD Biosciences; B159), CD16-APCCy7(BD Biosciences; 3G8), CD45-APC(HI30), CD103-FITC(BER-ACT8), CD69-PE(FN90), CD8a-PECy7(RPA-T8), CD45RO-APC-Cy7(UCHL1), CD127-AlexaFluor647(A019D5), PD-1(CD279)-APC(EH12.2H7).
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9

Isolation and Culture of CD8+ T Cell Subsets

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Blood samples were collected at the Vitalant in San Francisco, CA. All donors were age 50 or older, provided written informed consent, and were de-identified. Total human CD8+ T cells were enriched using the RosetteSep Human CD8+ T Cell Enrichment Cocktail (Stemcell Technologies, 15063). Then, the following antibodies were used to stain CD8+CD28+ and CD8+CD28- T cells: fixable viability dye eFlour506 (Invitrogen, 65–0866-14), CD3-PECy5 (BD Biosciences, 555334), CD8-V450 (BD Biosciences, 560347), and CD28-PE (Invitrogen, 12–0289-42). Sorting was performed on an ARIA II (BD Biosciences). The gating strategy is illustrated in Supplementary Fig. 1b.
T cells were cultured in RPMI 1640 medium supplemented with 10% FBS, 2 mM l-glutamine, and penicillin–streptomycin. Lys05 was used at 5 μM for 14 h.
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10

Quantifying Immune Cell Populations in Epididymal Fat

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The dissected epididymal fat samples were minced in DMEM with 1 mg/ml collagenase P (Roche, Mannheim, Germany) and 5% BSA. After 45 min of shaking incubation at 37 °C, any debris was filtered using nylon mesh. The stromal vascular fraction (SVF) was separated via centrifugation (500 g for 10 min). The SVF was washed and incubated with antibodies for further flow cytometry analysis. For the analysis of macrophage population, the SVF was stained with following antibodies: CD11b-FITC (BD 557396, BD Biosciences, Franklin Lakes, NJ), F4/80-Bv421 (BD 565411), CD206-APC (BD 565250), and MHC II-PE (BD 562010). For the analysis of lymphocyte population, the SVF was stained with following antibodies: CD19-APC-Cy7 (BD 561043) and CD3-PE-Cy5 (BD 561108). Samples were analyzed using a BD FACSCanto and FACSDiva software (BD Biosciences, Franklin Lakes, NJ). Data were processed with FlowJo software (Tree Star Inc. Ashland, OR).
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