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Yellow green streptavidin fluorescent beads

Manufactured by Thermo Fisher Scientific

The yellow-green streptavidin-fluorescent beads are a type of lab equipment designed for use in various scientific applications. Streptavidin, a protein derived from the bacterium Streptomyces, is covalently attached to the surface of the fluorescent beads, providing a high-affinity binding site for biotinylated molecules. These beads emit a yellow-green fluorescence when exposed to the appropriate excitation wavelength, making them useful for detection and quantification purposes in biological assays and research techniques.

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6 protocols using yellow green streptavidin fluorescent beads

1

Antibody-Dependent Cell Phagocytosis Assay

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ADCP was measured as previously described (65 (link)). Briefly, gp120 CM235 (NIH HIV Reagent Program, Division of AIDS, NIAID, NIH: HIV-1 CM235 gp120 Recombinant Protein, ARP-12816, contributed by NIAID, DAIDS) was biotinylated at a biotin-to-protein ratio of 50 according to the manufacturer’s instructions (Thermo Fisher Scientific) and incubated with yellow-green streptavidin fluorescent beads (Molecular Probes) for 2 hours at 37°C. Ten microliters of a 100-fold dilution of beads-protein was incubated for 2 hours at 37°C with 100 μL of 200-fold diluted plasma samples before addition of Tamm-Horsfall protein 1 (THP-1) cells (20,000/well; MilliporeSigma). After an 18-hour incubation at 37oC, the cells were fixed with 4% formaldehyde solution (Tousimis), and fluorescence was evaluated on an LSR II (BD Biosciences). The phagocytic score was calculated by multiplying the percentage of bead-positive cells by the geo MFI of the bead-positive cells and dividing by 104.
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2

Antibody-Dependent Cell-Mediated Phagocytosis Assay

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ADCP was measured using monocytic THP-1 cells (ATCC, Manassas, VA), as previously described (42 (link)). Briefly, CRF01_AE gp140 protein was biotinylated at a biotin to gp140 ratio of 50 following manufacturer’s instructions (Thermo Fisher, Waltham, MA) and excess biotin was removed using Zeba desalting columns (Thermo Fisher, Waltham, MA). Biotinylated gp140 was incubated with yellow-green streptavidin-fluorescent beads (Molecular Probes, Eugene, OR) for 2 hours at 37°C. The gp140 beads were diluted 100-fold. In a 96-well plate, 10μl of diluted beads were mixed with diluted mother (1:3000) or infant (1:1000) plasma then incubated 2h at 37°C. Healthy donor plasma was utilized as a negative control. THP-1 cells (20,000 cells per well) were added and plates were incubated at 37°C for 18 hours. Cells were fixed with 4% paraformaldehyde solution and fluorescence was evaluated on an LSRII flow cytometer (BD Bioscience, Franklin Lakes, NJ). The phagocytic score was calculated by multiplying the percentage of bead-positive cells by the geometric mean fluorescence intensity of the bead-positive cells and dividing by 104.
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3

SARS-CoV-2 Spike Protein Phagocytic Assay

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ADCP was measured as previously described (37 (link)). Briefly, biotinylated SARS-CoV-2 spike proteins from D614G and BA.1 (both from Sino Biological) were incubated with yellow-green streptavidin-fluorescent beads (Molecular Probes) for 2 hours at 37°C. Ten microliters of a 100-fold dilution of beads–protein was incubated for 2 hours at 37°C with 100 μl of a 1000-fold diluted plasma samples before the addition of THP-1 cells (25,000 cells per well; MilliporeSigma, Burlington, MA, USA). After 19 h of incubation at 37°C, the cells were fixed with 2% formaldehyde solution (Tousimis, Rockville, MD, USA), and fluorescence was evaluated on an LSR II (BD Biosciences). The phagocytic score was calculated by multiplying the percentage of bead-positive cells by the geometric mean fluorescence intensity (MFI) of the bead-positive cells and dividing the product by 104.
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4

SARS-CoV-1 and SARS-CoV-2 S Protein Binding Assay

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ADCP was measured as previously described42 (link). Briefly, SARS-CoV-1 and SARS-CoV-2 S proteins were biotinylated according to manufacturer’s instructions (ThermoFisher Scientific), at a biotin to protein ratio of 50, and then incubated with yellow-green streptavidin-fluorescent beads (Molecular Probes) for 2 h at 37 °C. 10 ul of a 100-fold dilution of beads-protein mixture was incubated for 2 h at 37 °C with 100ul of VNAR (1 ug/ml, 0.2 ug/ml, and 0.04 ug/ml), before addition of THP-1 cells (25,000 cells per well; Millipore Sigma, Burlington, MA, USA). After 19 h incubation at 37 °C, the cells were fixed with 4% formaldehyde solution (Tousimis, Rockville, MD, USA) and fluorescence was evaluated on a LSRII (BD Biosciences). The phagocytic score was calculated by multiplying the percentage of bead-positive cells by the geometric mean fluorescence intensity (MFI) of the bead-positive cells and dividing by 10,000.
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5

SARS-CoV-2 Spike Protein-Mediated ADNP Assay

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Biotinylated SARS-CoV-2 spike proteins from D614G and BA.1 variants were incubated with yellow-green streptavidin-fluorescent beads (Molecular Probes) for 2 hours at 37°C. Ten microliters of a 100-fold dilution of beads–protein was incubated for 2 hours at 37°C with 100 μl of a 1000-fold diluted plasma samples before the addition of effector cells (50,000 cells per well). Fresh peripheral blood leukocytes from human were used as effector cells after red blood cell lysis with Ammonium-Chloride-Potassium lysing buffer (Thermo Fisher Scientific). After 1 hour of incubation at 37°C, the cells were washed, surface-stained, and fixed with 4% formaldehyde solution (Tousimis, Rockville, MD, USA), and fluorescence was evaluated on an LSR II (BD Biosciences). Antibodies used for flow cytometry were anti-human CD3 AF700 (clone UCHT1) and anti-human CD14 APC-Cy7 (clone MϕP9; both from BD Biosciences) and anti-human CD66b Pacific Blue (clone G10F5, BioLegend). The ADNP phagocytic score was calculated by multiplying the percentage of bead-positive neutrophils (side-scatter (SSC) high, CD3CD14CD66+) by the geometric MFI of the bead-positive cells and dividing the product by 104.
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6

SARS-CoV-2 Antibody Phagocytosis Assay

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Biotinylated SARS-CoV-2 prefusion stabilized S trimer was incubated with yellow-green streptavidin-fluorescent beads (Molecular Probes) for 2 h at 37 °C. Ten microliters of a 100-fold dilution of protein-coated beads was incubated for 2 h at 37 °C with 100 μL of 8,100-fold diluted plasma samples before addition of effector cells (50,000 cells per well). Fresh human PBMCs were used as effector cells after red blood cell lysis with Ammonium-Chloride-Potassium (ACK) lysing buffer (ThermoFisher Scientific). After 1 h incubation at 37 °C, cells were washed, surface stained, and fixed with 4% formaldehyde solution (Tousimis), and fluorescence was evaluated on an LSRII flow cytometer (BD Bioscience). Antibodies used for flow cytometry included anti-human CD3 AF700 (clone UCHT1), anti-human CD14 APC-Cy7 (clone MϕP9) (BD Bioscience, San Jose, C), and anti-human CD66b Pacific Blue (clone G10F5) (BioLegend). The phagocytic score was calculated by multiplying the percentage of bead-positive neutrophils (SSC high, CD3− CD14− CD66+) by the geometric mean of the fluorescence intensity of bead-positive cells and dividing by 10,000.
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