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Ultra 5 block

Manufactured by Thermo Fisher Scientific
Sourced in United States, Germany, Denmark

The Ultra V Block is a laboratory equipment designed to provide a stable and uniform temperature environment for a variety of applications. It features a compact and durable construction, with precise temperature control capabilities. The core function of the Ultra V Block is to maintain a consistent temperature within the specified range, ensuring reliable and reproducible results in laboratory experiments and processes.

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56 protocols using ultra 5 block

1

Immunohistochemical Analysis of PD-L1, PD-1, and VISTA

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Immunohistochemistry was carried out with antibodies directed against PD-L1 [dilution 1:100, E1L3N, Cell Signaling, Danvers, USA (catalog #13684)], PD-1 [dilution 1:100; clone MRQ-22, Cell Marque, Rocklin, USA (#315M-96)], and VISTA [1:500; clone D1L2G, Cell Signaling (#64953)]. Immunostaining of PD-L1 and PD-1 was performed with the autostainer Bond™ Max System (Leica Microsystems GmbH, Wetzlar, Germany). The immunoreaction was visualized with the Bond™ Polymer Refine Detection Kit [brown labeling; Novocastra; Leica Microsystems GmbH, Wetzlar, Germany (#DS9800)]. Immunostaining of VISTA was performed manually: Following antigen retrieval in citrate buffer (pH6), specimens were incubated with hydrogen peroxide block and Ultra V Block [both Thermo Scientific, Braunschweig, Germany (TA-125-HP and TP-125-HL)] to avoid unspecific reactions. The immunoreaction was visualized with the ImmPRESS-HRP-Universal–Antibody Polymer and the NovaRED substrate kit [both VectorLabs, Peterborough, United Kingdom (#SK-4800)]. Counterstaining was carried out with hematoxylin [Dr. K. Hollborn & Söhne GmbH & Co KG; Leipzig, Germany (#88663)].
Germinal centers of lymph follicles served as internal positive control for PD-L1 and PD-1.
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2

Parotid Gland Tissue Analysis of pSS

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Formalin-fixed (4%), paraffin-embedded parotid gland tissue sections (4 μm) of five pSS patients from the inception cohort were included. Patients were selected based on the presence of LELs (identified by H&E staining). After deparaffinization and heat-induced antigen retrieval in sodium citrate buffer (pH 6.0) for 20 min and endogenous peroxidase (0.3% H2O2) blocking, Ultra V Block (ThermoFisher Scientific) was applied for 5 min. Slides were incubated overnight at 4 °C with 2.5 μg/mL monoclonal mouse anti-human PAX5 antibody (BD Biosciences, clone 24/Pax-5) and 1 μg/mL monoclonal rabbit antihuman CD11c antibody (Abcam, clone EP1347Y) diluted in PBS/1% BSA/0.05% Tween-20. Secondary antibody-based detection was performed using the MultiVision polymer detection system (anti-rabbit/HRP and anti-mouse/AP polymers; ThermoFisher Scientific) according to the manufacturer’s instructions.
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3

Quantifying Neointima Formation via Immunohistochemistry

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Paraffin sections were deparaffinized and rehydrated. Hematoxylin/Eosin (HE) and Lawson stainings for measuring neointima formation were performed as described previously [19] (link). Proliferating cells were detected with an antibody against Ki67, antigen retrieval was performed at pH 6.0 and sections were blocked with Ultra-V-block (Thermo Scientific). The first antibody was incubated overnight at 4°C followed by an HRP-conjugated secondary goat anti-rabbit antibody. DAB substrate was used for detection. After counterstaining with hematoxylin all the sections were embedded in pertex (HistoLab). Neointimal area was quantified using Leica QWin V3 software.
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4

Immunofluorescence Staining of Tissue Sections

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The tissue sections were prepared as earlier described. The tissue was encircled with a PAP pen and blocked for 1 h with Ultra V Block (TA-060-UB, Thermo scientific). Approximately 25 µg antibody fragments were dissolved in Ultra V Block, 10 % goat serum and 1:100 anti-CK19 to a total volume of 100 µL and added to the encircled area. Incubation was performed for 3 h in humid chambers. The liquid was removed by aspiration, and the slide was washed four times 1 min in PBS. The slide was incubated for 30 min in the dark with mouse Cy3-conjugated anti-c-Myc antibody [9E10] 1:250 (Sigma-Aldrich), Alexa Fluor 488-conjugated goat anti-mouse IgG2a 1:500 (Invitrogen), DAPI 1:1000 (Invitrogen) and 10 % goat serum dissolved in Ultra V Block to 100 µL. Alternatively, the antibody fragments above were replaced with an anti-Ki67 antibody (Abcam) in a dilution of 1:100, and as secondary antibody, a goat anti-rabbit antibody coupled to Alexa 546 (Life technologies) was added in dilution of 1:500. The slide was washed three times 1 min in PBS and mounted with Fluoromount mounting media (Sigma-Aldrich) and cover glass.
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5

Immunohistochemistry of FoxO1 in Uterine Tissue

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Uterine tissues fixed in 5% (v/v) formaldehyde (Merck, USA) for 24 h were dehydrated through a graded ethanol series and embedded in paraffin. Five micrometer cut uterine sections were taken. After deparaffinization and rehydration, citrate buffer (pH 6.0) was used for antigen retrieval using microwave. Subsequently, the slides were washed in PBS and endogenous peroxidase activity was blocked by 3% hydrogen peroxide in methanol for 15 mins at room temperature. After washing with PBS, the sections were treated with ultra V block (Thermo, UK; cat no:TA-125-UB,) and incubated with rabbit FoxO1 primary antibody (1:100 dilution; Cell Signaling, USA; cat no:2880S) overnight at 4°C. Next day, after washing out the primary antibody, slides were incubated for 60 min at room temperature with anti-rabbit secondary antibody (Vector, USA; BA-1000, 1/500 μL,) followed by incubation with horseradish peroxidase conjugated Streptavidin (Thermo Scientific, UK; TS-125-HR) for 30 min at room temperature. All incubation steps were performed in a humidified chamber to avoid dehydration of the slides. Positive immunoreactions were visualized with diaminobenzidine (DAB)-peroxidase substrate (Sigma; cat no:D4168) and counterstaining was performed with hematoxylin. FoxO1 expression was evaluated and photographed under a Zeiss (Oberkochen, Germany) light microscope.
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6

Immunohistochemical Analysis of HSF1 Expression

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For immunohistochemistry, formalin-fixed and paraffin-embedded (FFPE) sections were used. After deparaffinization, tissue sections were pretreated with citrate buffer (pH 6) for antigen retrieval and incubated with hydrogen peroxide block (TA-060-HP, ThermoFischer Scientific, Waltham, MA, USA) and Ultra V Block (ThermoFischer Scientific) to avoid unspecific reactions. Immunostaining was performed using a rabbit polyclonal anti-HSF1 antibody (Sigma-Aldrich Cat# HPA008888, RRID:AB_1079088; 1:500) in a moist chamber at room temperature for 30 min, following incubation overnight at 4 °C. Slides were washed between steps with Tris-buffered saline (TBS). Immunoreactions were visualized with the N-Histofine Simple Stain MAX PO System (#414142F, Nichirei Bioscience, Tokyo, Japan) and DAB substrate (#SK-4100, Vector Laboratories, Burlingame, CA, USA). The specimens were counterstained with hematoxylin (#MHS128, Merck, Darmstadt, Germany). The omission of the primary antibody served as a negative control. For evaluation, sections were assessed using the intensity of staining (S) (0: no staining; +1: weak; +2 moderate, +3 strong) and the average percentage of immunoreactive cells (P) was graded as 0 (negative), 1: <10%; 2: 10–50%, 3: 51–80%; 4: ≥81%. The expression score (ES) was calculated by the equation ES = P × S.
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7

Immunohistochemical Detection of C/EBPδ

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C/EBPδ stainings were performed essentially as described before [54 (link),55 (link),56 (link),57 (link)] with minor modifications. Four micron-thick paraffin embedded tissue sections were deparaffinized and treated with 0.3% H2O2 in methanol for 15 min to block endogenous peroxidase activity. Subsequently, slides were blocked with Ultra V block (#TA-125-UB; Thermo Fisher Scientific, Waltham, MA, USA) and incubated with a rabbit polyclonal antibody against C/EBPδ (#GWB-MM818H; GenWay Biotech, San Diego, CA, USA) in a 1:1000 dilution in PBS at 4 °C overnight. The next day, slides were incubated with Powervision poly-HRP anti rabbit IgG (#DPVM-55HRP; Immunologic, Duiven, Netherlands) for 30 min at room temperature and stained using 3,3’Diaminobenzidine (Bright DAB, #BS04-999; Immunologic). Hematoxylin (1:10 in demineralized H2O) was applied as counterstaining.
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8

In Situ Caspase-1 Activation Assay

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Caspase-1 activation was assessed in situ on 8-μm unfixed frozen sections using the green fluorescein–fluorescent-labeled inhibitor of caspases (FLICA) caspase-1 kit (Immunohistochemistry Technologies, Bloomington, MN) according to the manufacturer’s instructions. This assay uses the fluorescent inhibitor probe fluorescein-YVAD-FMK to label active caspase 1 enzyme in living cells or tissue samples. Briefly, unfixed frozen sections of cultured explants were blocked with UltraV block (ThermoScientific, Waltham, MA) for 10 minutes, incubated for 2 hours with FLICA stock solution (1:100 dilution), and washed. Nuclei then were stained with 4′,6-diamidino-2-phenylindole (1:1000; inVitrogen, Waltham, MA). Sections were mounted using the Prolong anti-fade medium (InVitrogen). The fluorescence was observed on a fluorescent microscope (Axiovert 200-M; Zeiss, Göttingen, Germany) equipped with an ApoTome slider. Image processing was performed using an AxioCam camera and AxioVision software (Zeiss, Goettingen, Germany).
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9

Immunohistochemical Analysis of CD45+ Cells

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Tissues were fixed with 4% paraformaldehyde immediately after explantation. Hematoxylin-eosin (H/E) staining and IHC staining were performed using standard protocols 17 (link). For IHC staining, temperature-based antigen retrieval was performed (70 °C, 160 W, 40 min) followed by a descending alcohol series. Endogenous peroxidases were blocked with hydrogen peroxide (10 min) and nonspecific antibody binding with Ultra V Block (5 min; Thermo Fisher) followed by mouse-on-mouse blocking (MOM, 1 hour; Vector Laboratories, Burlingame, CA) and serum-free protein block (30 min; Dako, Glostrup, Denmark). Slides were incubated (30 min, RT) with unconjugated monoclonal mouse anti-human antibodies against CD45 (dilution 1:1000; clone: 2B11, Dako) and developed with ultravision LP large volume detection system horseradish peroxidase (HRP) polymer (Thermo Fisher) and diaminobenzidine (DAB) according to manufacturer's instructions. Cells were counterstained (10 sec) with hematoxylin.
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10

Immunofluorescence Staining for Fixed Cells

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Cells were fixed in 4% paraformaldehyde for 15–20-min, permeabilized with 0.5% triton-X100, blocked with UltraV block (ThermoScientific) for 10-min and incubated with primary antibodies diluted in 0.1% Tween in PBS for 3 h at room temperature or overnight at 4°C. Following 30–60-min incubation with secondary antibodies at room temperature samples were mounted with Vectashield with DAPI (Vector Laboratories) and covered with glass coverslips. Antibodies are provided in Supplementary Table S5.
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