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3 protocols using pdlim2

1

Antibody Characterization for Protein Detection

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Commercially available antibodies were used to detect FK2 (Enzo Life Sciences, BML-PW8810), DDK tag (Origene, TA50011), HCV NS3 (TORDJI-22, Abcam), HCV core (ThermoFisher Scientific, MA1-080), HAV capsid (Commonwealth Serum Laboratories, K24F2), Dengue capsid (Dr. Tom Hobman, University of Alberta), STAT1 (Cell Signaling Technologies, CST9175), STAT2 (Santa Cruz, sc-476), Y701-phosphoSTAT1 (Cell Signaling Technologies, 9167S), Y690-phosphoSTAT2 (Cell Signaling Technologies, 88410S), PDLIM2 (Abcam, 246868), p65 NF-κB (Santa Cruz, sc-372), Actin (EMD Millipore, MAB1501), PARP-1 (BD Pharmingen, BD556362), Lamin (Zymed, 33–2000), B-tubulin (Abcam, AB6046), Anti-NS5a (gift from Charlie Rice, 9E10). For western blotting, goat anti-mouse IR Dye 800 (Licor, 926–32210) and goat anti-rabbit IR Dye 680 (Licor, 926–32221) were used. For immunofluorescence, Alexa Fluor 546 goat anti-mouse IgG (ThermoFisher Scientific, A11030), Alexa Fluor 488 goat anti-rabbit IgG, (ThermoFisher Scientific, A11008), or Alexa Fluor 647 goat anti-mouse IgG (ThermoFisher Scientific, A21236) were used.
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2

Whole-Cell and Nuclear Protein Extraction

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Whole-cell and nuclear extract preparation and western blotting were performed as described5 (link) with 30 μg whole-cell or 20 μg nuclear extracts. Primary antibodies were: PDLIM2 (sc-79988), IκBα (sc-371; both from Santa Cruz, Heidelberg, Germany), PDLIM2 (ab68220; Abcam, Cambridge, UK) and β-actin (A5316, Sigma-Aldrich).
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3

Protein Quantification and Analysis

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Total protein samples were extracted and the concentration was measured using DC protein assay method of Bradford (BD Bioscience, Bedford, MA, USA). A total of 100 μg of protein from each sample was separated by 10% SDS-PAGE and transferred to an equilibrated polyvinylidene difluoride membrane (Amersham Biosciences, Buckinghamshire, UK). Proteins were detected by enhanced chemiluminescence (Amersham Corporation, Arlington Heights, IL, USA) after incubation with primary antibody specific for OR3A4 (1:3,000) or PDLIM2 (1:2,000; Abcam, Cambridge, MA, USA) at 4°C overnight followed by incubation with secondary antibody. Protein levels were normalized to those of total GAPDH using a monoclonal anti-GAPDH antibody (Sigma-Aldrich Corporation, St. Louis, MO, USA) as previously described [4 (link)].
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