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Pentane

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Pentane is a colorless, volatile hydrocarbon compound that is used as a laboratory reagent. It has the chemical formula C5H12 and is the straight-chain isomer of the alkane series. Pentane is commonly used as a solvent, as a fuel, and in various industrial processes.

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16 protocols using pentane

1

Nano-encapsulation of scFv Protein

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scFv at 1% w/w was encapsulated into 10:90 CPTEG:SA NPs by an anti-solvent nano-encapsulation method at room temperature, as described previously [41 (link)]. Briefly, scFv at 20 mg/mL in 50 µL PBS was added to non-functionalized polymer dissolved in methylene chloride at 20 mg/mL while sonicating at 30% for 30s and immediately precipitated into pentane (Thermo Fisher Scientific) at room temperature at a 1:250 MeCl2: pentane ratio. NP morphology and size were determined using field-emission scanning electron microscopy (Quanta 250 FEG, Hillsboro, OR, USA). ImageJ 1.43u software (National Institutes of Health, Bethesda, MD, USA) was utilized to quantify NP size and size distribution. NP release kinetics and encapsulation efficiency were performed in vitro as described previously [43 (link)]. Briefly, scFv total protein was determined using a Pierce bicinchoninic acid (BCA) assay (Thermo Fisher Scientific), and the absorbance was recorded using a spectrophotometer at OD570. A standard curve of scFv from 0.5–125 µg/mL was used for quantification.
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2

Nanoparticle Encapsulation of QD and Mito-Apo

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Either 0.5 wt% QD or 5 wt% Mito-Apo were incorporated into polyanhydride nanoparticles by a modified anti-solvent nano-encapsulation method (42 (link)). Briefly, the synthesized polymer (100 mg), QD, or Mito-Apo (0.1 or 0.2 mg) were dispersed in 4 mL of methylene chloride (Fisher Scientific) and sonicated for 60 seconds with a sonication probe (Sonics and Materials) (43 ). The solution was poured into 1 L of pentane (Fisher Scientific) and the particles were recovered by vacuum filtration. The particle morphology and particle size were determined using scanning electron microscopy (Quanta 250 FE-SEM, FEI). ImageJ 1.43u (National Institutes of Health) was utilized to quantify primary particle sizes for construction of the particle size distribution.
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3

Synthesis of p-Vinyl Benzyl Chloride Polymer

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p-Vinyl benzyl chloride (VBC) and AIBN (azo-bis-(isobutylonitril)) were purchased from Sigma-Aldrich (Taufkirchen, Germany). 4-(Chloromethyl)phenyltrichlorosilane was purchased from ABCR (Karlsruhe, Germany). PMDETA (N,N,N′,N″,N″-pentamethyldiethylentriamin) was purchased from Acros (Geel, Belgium). NaI, NaH, Cu(I)Cl, Cu(II)Cl2, triethyl amine, ethyl acetate, acetonitrile, acetone, ethanol, THF, DMF, toluene, diethyl ether, pentane, dichloromethane, methanol and chloroform were purchased from Fisher Scientific (Schwerte, Germany), dimethyl octylamine from TCI (Eschborn, Germany). All chemicals and solvents are used without further purification. Si wavers were purchased from Si-Mat-Silicon Materials e.K. (Kaufering, Germany).
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4

Quantification of OH-PAH Metabolites

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OH-PAH standards including 1-hydroxypyrene [1PYR (MW: 218.26 g/mol, purity 98%)] and 2-naphthol [2NAP, (MW: 144.17 g/mol, purity 99%)] were purchased from Sigma-Aldrich Inc., (St Louis, MO). HPLC-grade reagents including acetonitrile, methanol, pentane, isooctane and ethyl acetate were obtained from Fisher Scientific (Pittsburgh, PA). Sodium acetate (reagent grade, >99%), potassium dihydrogen phosphate (ACS reagent, ≥99%) and the enzyme β-glucuronidase (from Helix pomatia, type HP-2) was purchased from Sigma-Aldrich. Type I ultrapure water was obtained from Milli-Q water purification system (Millipore, Bedford, MA). All stock solutions were prepared by dissolving 1 mg of the native metabolites in 100 mL of methanol to obtain a 10 µg/mL concentration. Two working solutions of 2NAP and 1PYR were prepared by diluting the stock solution in methanol to yield a final concentration of either 0.5 µg/mL or 0.05 µg/mL. Calibration solutions (6 levels) were prepared in blank pooled urine matrix by spiking appropriate volumes of the working solutions to yield the following concentration ranges: 2NAP, 1–25 ng/mL and 1PYR, 0.1–6 ng/mL. All stock and working standards were prepared in amber vials and stored at −20 °C until further use.
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5

Polymer and Nanoparticle Synthesis Protocol

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Chemicals used for the polymer and nanoparticle synthesis, 4-p-hydroxybenzoic acid, tri-ethylene-glycol, and 1,6-dibromohexane were obtained from Sigma Aldrich (St. Louis, MO); dimethylformamide, acetic acid, acetonitrile, acetic anhydride, toluene, methylene chloride, pentane were purchased from Fisher Scientific (Fairlawn, NJ) and 4-p-flourobenzonitrile was purchased from Apollo Scientific (Cheshire, UK).
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6

Fabrication and Characterization of Textured Surfaces

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Silicon (Si) wafers (University
wafer, rms <0.5 nm), polytetrafluoroethylene (PTFE) (McMaster,
rms = 29 nm), and glass surfaces (Corning, rms = 87 nm) were used
as flat surfaces. Textured surfaces were fabricated using photolithography
with SU-8 (Kayaku) as the photoresist. Octadecyltrichlorosilane (OTS)
(Sigma-Aldrich) in pentane (Fisher Chemical) or toluene (Fisher Chemical)
solutions were used for surface modification. SH_x_y was used to identify
the SH surfaces where x corresponds to the diameter of circular pillars
and y corresponds to the pillar spacing in μm. The cylindrical
pillars, with a height of approximately 80 μm, were arranged
in a square lattice.
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7

Synthesis of Fluorescent Polymer Conjugates

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N-Acryloyl morpholine (NAM)
(Aldrich, 97%) was distilled under reduced pressure (120 °C;
10 mm Hg) to remove the inhibitor. N-Acryloxysuccinimide
(NAS) was synthesized as previously described.22 (link) 2,2′-Azobis(isobutyronitrile) (AIBN) (Fluka, 98%)
was purified by recrystallization from ethanol. 1,4-Dioxane (Acros,
99%) was distilled over LiAlH4 (110 °C). Succinimidoxycarbonylethyl
dithiobenzoate (SEDB) was synthesized and purified according to a
previously published protocol.13a Trioxane
(Acros, 99%), diisopropylethylamine (DIPEA; Sigma-Aldrich, ≥99.5%),
4-(2-aminoethyl)morpholine (AEM; Aldrich, 99%), AlexaFluor 647 cadaverine
(AF647, Life Technologies), HaloTag amine (O4) ligand (Halo-ligand-NH2, Promega, France), HaloTag AlexaFluor 488 (Promega), anhydrous
dimethylformamide (DMF, Fisher Scientific, 99.99%), pentane (Fisher
Scientific), ethyl acetate (Fisher Scientific), silica gel (Sigma-Aldrich),
MgSO4 (Sigma-Aldrich), and chloroform (Fisher Scientific)
were used as received.
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8

Synthesis and Characterization of CPTEG:CPH Copolymer Nanoparticles

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For the synthesis of the 1,6-bis(p-carboxyphenoxy)hexane (CPH) and 1,8-bis(p-carboxyphenoxy)-3,6-dioxaoctane (CPTEG) monomers and the corresponding 20:80 CPTEG:CPH copolymer, and the ivermectin and doxycycline-loaded nanoparticles, acetic acid, acetic anhydride, acetone, acetonitrile, chloroform, dimethyl formamide, ethyl ether, hexane, methylene chloride, pentane, petroleum ether, potassium carbonate, sodium hydroxide, sulfuric acid, and toluene were purchased from Fisher Scientific (Fairlawn, NJ). The chemicals 1,6-dibromohexane, 1-methyl-2-pyrrolidinone, hydroxybenzoic acid, N,N-dimethylacetamide, sebacic acid, and tri-ethylene glycol were obtained from Sigma Aldrich (St. Louis, MO). The chemical 4-p-fluorobenzonitrile was purchased from Apollo Scientific (Cheshire, UK). For 1H NMR analysis deuterated chloroform and deuterated dimethyl sulfoxide were purchased from Cambridge Isotope Laboratories (Andover, MA). Rhodamine B, a fluorescent dye, and the drugs, ivermectin and doxycycline, were purchased from Sigma Life Science (St. Louis, MO).
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9

Polymer Synthesis Protocol

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For polymer synthesis, N,N-(diethylamino)ethyl methacrylate (DEAEM), polyvinylpyrrolidone (MW = 40,000 Da), and pyridine-2-carboxaldehyde were purchased from Sigma Aldrich (St. Louis, MO, USA). Alpha-bromoisobutyryl bromide, basic alumina powder, copper acetate monohydrate, diethyl ether, magnesium sulfate, methylene chloride, n-propylamine, pentane, Pluronic® F127, Pluronic® P123, sea sand, sodium borohydride, triethylamine, and toluene were purchased from Fisher Scientific (Waltham, MA, USA).
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10

Volatile Organic Compounds Analysis

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The chemical standards dimethyl sulfide, carbon disulfide, 2‐methyl‐1‐propanal, 2,3‐butanedione, 2‐butanone, chloroform, 2‐methyl‐1‐propanol, 3‐methylbutanal, 3‐methyl‐2‐butanone, 2‐methylbutanal, 2‐pentanone, 1‐penten‐3‐ol, pentanal, 3‐pentanone, acetoin, 3‐methyl‐1‐butanol, methylcyclohexane, dimethyl disulfide, 2‐methyl‐1‐butanol, 2‐penten‐1‐ol, 3‐hexanone, hexanal, ethyl butyrate, 1,2‐dimethylcyclohexane, 1‐hexanol, 2‐heptanone, dimethyl trisulfide, octanal, 2‐ethyl‐1‐hexanol, 2‐nonanone, nonanal, decanal, 2‐undecanone, and 4‐heptanone were purchased from Sigma‐Aldrich. The chemical standards 2,4‐octadiene and 1,1,3‐trimethylcyclohexane were purchased from BOC Sciences. Pentane, n‐heptane, toluene, sodium sulfate (Na2SO4), and anhydrous powder (ACS grade) were purchased from Fisher Scientific.
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