The largest database of trusted experimental protocols

43 protocols using nlrp3

1

Immunofluorescence Assay for Cellular Markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
Each group of NPCs was fixed with 4 % paraformaldehyde on Petri dishes for 20 min. Following this, cells underwent three PBS washes and were permeabilized with 0.5 % Triton X-100 (Sigma-Aldrich, USA) (diluted in PBS) for 20 min. Subsequently, NPCs were blocked with 5 % Bovine Serum Albumin (BSA) for 30 min. NLRP3 (1:100, Proteintech, China), GSDMD (1:100, Proteintech, China), Col2α (1:100; Proteintech, China), and MMP13 (1:100, Proteintech, China) were then incubated with NPCs for 12 h at 4 °C. Cells were subsequently subjected to fluorescent dye incubation. This was followed by incubation with a fluorescent secondary antibody (goat anti-rabbit Alexa Fluor 488, 1:500, Beyotime, China) for 1 h at room temperature, and then with DAPI for 10 min. Images were captured using a fluorescence confocal microscope (Nikon, Tokyo, Japan). These experiments were repeated a total of five times.
+ Open protocol
+ Expand
2

Western Blot Analysis of Immune Signaling

Check if the same lab product or an alternative is used in the 5 most similar protocols
Samples were washed three times with cold PBS for three times and cleaved with lysis buffer. Then, 100 μL of each protein lysate was separated by sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE). The separated proteins were then transferred onto polyvinylidene fluoride (PVDF) membranes and blocked in Tris-buffered saline Tween-20 (TBST) (washed with 1× TBST for 2 min and then sealed with 5% skimmed milk). Then, the PVDF membranes were incubated overnight at 4°C with the following primary antibodies: β-actin (1 : 5000, Abcam, Cambridge, UK), TLR4 (1 : 5000, Abcam, Cambridge, UK), NF-κB ((1 : 6000, Proteintech, Chicago, USA), NLRP3 (1 : 2000, Proteintech, Chicago, USA), GSDMD (1 : 1000, Abcam, Cambridge, UK), and GSDME (1 : 1000, CST, Boston, USA). The following morning, the membranes were washed three times with TBST and incubated with a secondary anti-mouse or anti-rabbit antibody HRP (1 : 10000) for 2 h at room temperature. Antibody binding was then detected with an enhanced chemiluminescence kit. Western blotting data were quantified with the ImageJ software. Each protein was analyzed in triplicate.
+ Open protocol
+ Expand
3

Western Blot Analysis of Inflammation Markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were lysed with the RIPA lysis buffer (Beyotime Institute of Biotechnology) containing protease inhibitors. The proteins were separated by the SDS-PAGE gel and transferred to a PVDF membrane. The membranes were probed with primary antibodies against NLRP3 (1:500; Proteintech), IL-1β (1:600; Cell Signaling), Caspase-1 (1:800; Cell Signaling), and β-actin (1:4000; Proteintech). The immune-reactive bands were visualized by the ECL (Thermo Scientific) Western blot detection system.
+ Open protocol
+ Expand
4

Western Blot Analysis of Immune Signaling

Check if the same lab product or an alternative is used in the 5 most similar protocols
Western blotting analysis was performed as previously described (Wang et al. 2017 (link)). Briefly, total proteins from cultured cells were obtained, separated by SDS–PAGE electrophoresis and transferred onto nitrocellulose membranes. Primary antibodies against IL-1β (1:1000, CST), NLRP3 (1:500, Proteintech), NF-κB (1:1000, CST), p-NF-κB (1:1000, CST), Atp5a1 (1:2000, Proteintech), Ndufv2 (1:5000, Proteintech), β-actin (1:10,000, Proteintech) and appropriate secondary antibodies were used. The optical density of bands was analyzed by ImageJ software. The expression levels of the examined proteins were normalized to those of β-actin.
+ Open protocol
+ Expand
5

Myocardial Protein Extraction and Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
The extraction of total myocardial tissue proteins was completed using RIPA lysis buffer (Solarbio, China), followed by the determination of protein concentration using a BCA kit (Solarbio, China). The proteins were denatured at high temperature, separated by SDS-PAGE electrophoresis, and then transferred to PVDF membranes (Millipore, USA). After completing the closure (60 min) at room temperature using non-fat milk, the proteins were incubated overnight at 4 ℃ with SIRT1 (dilution rate 1:1000, Abcam, USA), AMPK (dilution rate 1:1000, Abcam, USA), p-AMPK (dilution rate 1:1000, Abcam, USA), NLRP3 (dilution rate 1:1000, proteintech, China), GSDMD-N (dilution rate 1:1000, Cell Signaling Technology, USA), ASC (dilution rate 1:1000, Abcam, USA), IL-18 (dilution rate 1:1000, Abcam, USA), caspase-1 p20 (dilution rate 1:1000, Bioss, China), IL-1β (dilution rate 1:1000, Abcam, USA), and GAPDH (dilution rate 1:10000, Abcam, USA) primary antibodies. The proteins were incubated with secondary antibodies (dilution rate 1:10000, Santa Cruz Biotechnology, USA) at room temperature for 1 h the next day, and the protein bands were developed under the ultrasensitive automatic chemiluminescence imaging analysis system (FluorchemM, Protein Simple, USA). The detection of relative protein expression was completed using Image J (NIH, MD, USA) software.
+ Open protocol
+ Expand
6

Western Blot Analysis of Protein Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
Protein samples were separated by 8%, 10%, or 12% sodium dodecyl sulfate-polyacrylamide gels (SDS-PAGE) and then transferred onto PVDF membranes (EMD Millipore, Burlington, MA, USA). After being blocked with 5% non-fat milk, the membranes were incubated with the following primary antibodies at 4°C overnight: α-tubulin (GeneTex, Irvine, CA, USA), collagen I (GeneTex), α-SMA (Proteintech, Chicago, IL, USA), TGF-β (Cell signaling technology, Danvers, MA, USA), TNF-α (GeneTex), NLRP3 (Proteintech), caspase-1 (Proteintech), IL-18 (Proteintech), IL-1β (Proteintech), caspase-3 (GeneTex), caspase-8 (GeneTex), caspase-9 (GeneTex), and BCL-2 (GeneTex). Membranes were then incubated with HRP-conjugated mouse anti-IgG (EMD Millipore) or HRP-conjugated rabbit anti-IgG (EMD Millipore) secondary antibodies for 1 h. Membranes were developed using ECL detection reagent (EMD Millipore). Relative protein levels were quantified using Image J (Version 1.46, National Institute of Health, Bethesda, MD, USA), and protein densitometry were expressed relative to that of α-tubulin.
+ Open protocol
+ Expand
7

Western Blot Analysis of Hippocampal and PC12 Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
The total protein of the PC12 (n = 5 for each group) or hippocampus (n = 3 for each group) was extracted and separated on a 12% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) with a constant voltage of 75 V. The electrophoresed proteins were transferred to nitrocellulose membranes with a transfer apparatus (Bio-Rad, Hercules, CA, USA). The membranes were blocked with 5% nonfat milk in Tris-buffered saline (pH 7.5) with 0.05% Tween 20 for 2 hours at room temperature. Primary antibodies, including HSF1, NLRP3, IL-1, caspase1, and GAPDH (Proteintech, Chicago, IL, USA), were diluted to 1 : 1000 in TBS buffer overnight at 4°C. The blots were washed 3 times in TBS buffer for 10 min and then immersed in the secondary antibody solution containing the goat-IgG rabbit polyclonal antibody (1 : 5000 in TBS buffer, Proteintech) for 2 h and diluted with TBS buffer. The membranes were washed 3 times for 10 min in TBS buffer. The immunoblotted proteins were visualized using an ECL Western blot luminol reagent (Advansta, Menlo Park, CA, USA) and quantified using a Universal Hood II chemiluminescence detection system (Bio-Rad) by imaging scans.
+ Open protocol
+ Expand
8

NLRP3 Expression in Mouse Skin

Check if the same lab product or an alternative is used in the 5 most similar protocols
Tissue sections from mouse skin were deparaffinized, hydrated, antigen retrieval, serum blocking, incubation of primary antibody (NLRP3; Proteintech) and corresponding secondary antibodies, washing, diaminobenzidine color development, hematoxylin counterstaining, and mounting of the sections were performed sequentially. The expression and localization of NLRP3 in skin tissues were detected in three randomly selected high‐power fields per section under a microscope.
+ Open protocol
+ Expand
9

Protein Extraction and Western Blot Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total protein was extracted from cells or tissues with the use of RIPA Vs protease inhibitor cocktail (100:1), while cytoplasmic proteins and nucleoproteins were extracted by employing extraction kits (BOSTER, China). Protein concentration was quantified based on BCA kit (Beyotime, China). Equal proteins (15–25 μg) were separated on 10%–12% Sodium dodecyl sulfate (SDS) gels and then transferred onto Polyvinylidene fluoride (PVDF) (0.22/0.45 μm) membranes. After being blocked with 5% skim milk, the membranes were incubated with primary antibodies (1:1,000) overnight at 4°C. Primary antibodies consisted of Sucnr1 (Abcam, ab272856), Hif-1α (CST, #36169), IL-1β (CST, #12242), NLRP3 (Proteintech, #19771-1-ap), NF-κB (Proteintech, 66535-1-lg), Lamin B1 (Abcam, ab16048), Caspase-1 (Proteintech, 22915-1-ap), and β-Actin (Affinity, AF7018). Subsequently, the membranes were incubated with secondary antibody [goat anti-rabbit IgG HRP/goat anti-mouse IgG Horseradish Peroxidase (HRP) (1:10,000, ZSGP-BIO, China)] at Room temperature (RT) for 1 h. Bands were visualized with Enhanced chemiluminescence (ECL) reagent (MilliporeSigma, USA) and then captured on FluoChem E or ChemiDoc Imaging System. The optical density of bands was analyzed with the use of ImageJ software.
+ Open protocol
+ Expand
10

Endothelial Cell Protein Extraction and Western Blot

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total protein was extracted from endothelial cells using the same procedures as described in detail elsewhere41 (link). The protein concentrations were determined by BCA Protein Assay kit (Bio-Rad, Mississauga, ON, Canada). Equal amounts of protein lysates were separated by SDS-PAGE and transferred onto nitrocellulose membranes followed by block with 5% skimmed milk at room temperature for 2 h. Subsequently, the membranes were incubated with the primary antibodies against NLRP3 (Proteintech, Chicago, USA, 1:1000, Cat. No.: 19771-1-AP), ASC (Santa Cruz, USA, 1:500, Cat. No.: sc-22514-R), Caspase-1 (Proteintech, Chicago, USA, 1:1000, Cat. No.: 22915-1-AP), IL-1β (ABclonal, Boston, USA, 1:1000, Cat. No.: A1112), IL-18 (ABclonal, Boston, USA, 1:1000, Cat. No.: A1115), or GAPDH (Proteintech, Chicago, USA, 1:2000, Cat. No: 60004-1-lg) at 4 °C overnight. After washing with PBST three times, the membranes were incubated with the fluorescence-conjugated anti-rabbit IgG secondary antibody (1:10,000) for 1 h. Western blot bands were examined and analyzed by Odyssey Imaging System (LI-COR, Inc., Lincoln, NE, USA).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!