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Normal rabbit igg 12370

Manufactured by Merck Group
Sourced in United Kingdom

Normal Rabbit IgG 12370 is a laboratory reagent used as a control antibody in various immunoassays and other applications. It is purified from the serum of healthy rabbits and serves as a non-specific control to establish baseline signals or to account for non-specific binding in experiments.

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8 protocols using normal rabbit igg 12370

1

Immunoprecipitation and RT-qPCR for Epigenetic Regulators

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RIP was performed as reported in (25 ) starting from 1 mg of cleared lysate. Immunoprecipitated RNA was reverse transcribed for reverse transcription and real-time polymerase chain reaction (RT-qPCR) amplifications. List of primers is reported in Table S1. Primary antibodies for IP were: anti-EZH2 39901 (Active motif), anti-Snail AF3639 (R&D systems) and as negative control Normal Rabbit IgG 12370 (Millipore) or Normal Goat IgG AB-108-C (R&D systems).
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2

EZH2 and Snail Protein Interaction Protocol

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Cells were lysed in 50 mM Tris-HCl (pH 8.0), 150 mM NaCl, 5 mM EGTA (pH 8.0), 50 mM NaF (pH 8.0), 10% glycerol, 1.5 mM MgCl2, 1% Triton X-100 containing protease and phosphatase inhibitors (complete EDTA-free; Roche Applied Science, Mannheim Germany) and protein concentrations determined by Bradford method. One milligram of cell lysates, after preclearing with protein A-sepharose (GE Healthcare, Little Chalfont, Buckinghamshire, UK), was incubated with 5 μg of anti-EZH2 39901 (Active motif), anti-Snail AF3639 (R&D systems) and as negative control Normal Rabbit IgG 12370 (Millipore) or Normal Goat IgG AB-108-C (R&D systems). The complexes were incubated for 3 h with protein A-sepharose. Immune complexes were washed, eluted and denatured in Laemmli buffer. Proteins from either cell lysates or immunoprecipitation were resolved on sodium dodecyl sulphate-polyacrylamide gel electrophoresis and transferred to nitrocellulose membrane (162-0115; Bio-Rad Laboratories). Blots were probed with primary anti-EZH2 05-1319 (Millipore Corp.) or anti-Snail L70G2 (Cell Signaling Technology Inc., Danvers, MA, USA) and immune complexes were detected with horseradish peroxidase-conjugated species-specific secondary antiserum (Bio-Rad Laboratories), followed by enhanced chemiluminescence reaction (Bio-Rad Laboratories).
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3

Antibody Panel for Protein Localization

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The antibodies used in this study were: mouse monoclonal LH7:2 used at 1:2 dilution as described for IEM [43 (link)] and 1:800 for proximity ligation assay (PLA); Rabbit polyclonal antisera to type VII collagen raised against the NC1 domain (Moravian Biotechnology, Brno, Czech Republic); mouse monoclonal antibody against type VII collagen #611607 (lot 01591 30625) 1:200 dilution used for IF (BD Biosciences, San Jose, CA); PLOD3 (11027-1-AP, Lot 00001261) rabbit polyclonal used at 1:5 dilution for IEM and 1:10–20 for IMF (ProteinTech Group, Chicago Ill, USA); PLOD3 (60058-1-Ig) mouse monoclonal used at 1:500 dilution for Western blot (ProteinTech Group); Laminin-332 (γ2 chain) mouse monoclonal (MAB19562, Millipore, Billerica, MA); GAPDH mouse monoclonal (G8795, Sigma Aldrich, Dorset, UK); Actin mouse monoclonal (Abcam, ab8226); normal rabbit IgG (12–370, Millipore, Billerica, MA).
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4

Androgen Receptor RNA Interactome

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A native RIP (Zhao et al., 2010 (link)) was performed using the Magna RIP RNA-Binding Protein Immunoprecipitation Kit (Millipore) following the exact instructions of the manufacturer. To increase reproducibility, for each replicate we used exactly 2.0 × 107 LNCaP cells treated for 6 h with 0.1 nM R1881 (Sigma) or with vehicle (ethanol) and 5 μg of each antibody. The following antibodies were used from Millipore: Normal Rabbit IgG (12-370) and Anti-Androgen Receptor (06-680). The RNAs were extracted using Trizol, treated with TURBO DNase (Ambion) at 37°C for 30 min, purified using an RNeasy Micro Kit (Qiagen) and quantified with RiboGreen (Invitrogen). RIP-Seq was performed in biological duplicates (n = 2), RIP-qPCR in biological triplicates (n = 3); co-precipitated RNAs were detected either by high-throughput sequencing as described below or by RT-qPCR with two to three technical replicates for each biological replicate (primers in Supplementary Table S1).
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5

ChIP-seq Assay with NF-κB p65

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A ChIP assay was performed using the EZ‐ChIPTM kit (Millipore, Billerica, MA) according to the manufacturer's instructions. The following antibodies were utilized to immunoprecipitate cross linked protein–DNA complexes: rabbit anti‐ NF‐κB p65 (D14E12, Cell signaling Technology, Beverly, CA, USA) and normal rabbit IgG (12‐370, Millipore, Billerica, MA).
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6

ChIP-qPCR Protocol for Histone Modifications

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Cells (2  10 7 ) were cross-linked with 1% formaldehyde at 25°C for 10 min. Nuclei were digested with 100 units of MNase at 37°C for 15 min. Mono or dinucleosomes-sized chromatin was incubated with antibodies for 3 h at 4°C and recovered with protein A agarose beads. DNA was purified by phenol extraction and then analyzed by quantitative PCR. The sequences of primers for ChIP assay are presented in Supplementary Table S2 andS3.
Antibodies used in ChIP experiment are GATA-1 (sc-1233) from Santa Cruz Biotechnology, CTCF (07-729) from Millipore, Rad21 (ab992), H3 (ab1791) and H3K27ac (ab4729) from Abcam. Normal rabbit IgG (12-370) from Millipore was used as a negative control.
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7

Proteomic Profiling of L1TD1 Interactome

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All experiments were performed in feeder-free culture conditions on Matrigel (BD Biosciences) in mTeSR1 media (Stem Cell Technologies).
For IP, cells were lysed into NP-40 buffer. Lysates were preincubated with 10 μg/ml RNase A (QIAGEN) at +4°C. IP was carried out using M-280 sheep anti-rabbit IgG Dynabeads (11203D; Invitrogen) with L1TD1 HPA030064 (Ab1), HPA028501 (Ab2) (Sigma), SOX-2 #5024 (Cell Signaling), and normal rabbit IgG 12-370 (Millipore).
IP proteins were gel separated, digested, and submitted for LC-MS/MS analysis. The criteria used for inclusion as an L1TD1-interacting protein were (1) the presence of the protein in two out of three replicates, (2) more than one unique peptide was identified in the L1TD1 IP analysis, and (3) on/off or ≥3-fold enrichment of the identified peptides compared with the control IgG IP reaction.
Detailed methods are described in the Supplemental Experimental Procedures.
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8

ChIP-qPCR Protocol for Histone Modifications

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Cells (2  10 7 ) were cross-linked with 1% formaldehyde at 25°C for 10 min. Nuclei were digested with 100 units of MNase at 37°C for 15 min. Mono or dinucleosomes-sized chromatin was incubated with antibodies for 3 h at 4°C and recovered with protein A agarose beads. DNA was purified by phenol extraction and then analyzed by quantitative PCR. The sequences of primers for ChIP assay are presented in Supplementary Table S2 andS3.
Antibodies used in ChIP experiment are GATA-1 (sc-1233) from Santa Cruz Biotechnology, CTCF (07-729) from Millipore, Rad21 (ab992), H3 (ab1791) and H3K27ac (ab4729) from Abcam. Normal rabbit IgG (12-370) from Millipore was used as a negative control.
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