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6 protocols using talin t3287

1

Integrin and Cytoskeletal Protein Analysis

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Antibodies used in this analysis were: Hic-5 611164, β1 integrin clone 9EG7 553715, CD29 610467, ILK 611803 (BD Biosciences, Franklin Lakes, NJ USA); tensin1 NBP1-84129 (Novus Biologicals, Littleton, CO, USA); phosphotyrosine clone 4G10 05-321 (Millipore); talin T3287, fibronectin F3648, α-tubulin clone DM1A T9026, α-actinin A5044, tensin1 SAB200283 (Sigma-Aldrich, St. Louis, MO, USA); phosphotyrosine clone P-Tyr-100 9411 (Cell Signaling, Danvers, MA, USA); β1 integrin clone 12G10 ab30394 (Abcam, Cambridge, MA, USA); LAMP1 bs-1970R (Bioss, Woburn, MA, USA); Epcam G8.8 was deposited to the DSHB by Farr, A.G.
F-actin was visualized using Rhodamine phalloidin (Thermo-Fisher, Carlsbad, CA, USA) or Actistain 670 (Cytoskeleton, Denver, CO, USA). Fluorescently conjugated secondary antibodies used were: Dylight 488, 550 and 633 conjugated anti-mouse and anti-rabbit were purchased from Thermo-Fisher. FITC anti-rat, Alexa-fluor 488 anti-mouse, HRP-conjugated anti-mouse and anti-rabbit secondary antibodies were purchased from Jackson ImmunoResearch. The polydimethylsiloxane (PDMS) substrates were prepared as previously described(52 (link)).
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2

Integrin and Cytoskeletal Protein Analysis

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Antibodies used in this analysis were: Hic-5 611164, β1 integrin clone 9EG7 553715, CD29 610467, ILK 611803 (BD Biosciences, Franklin Lakes, NJ USA); tensin1 NBP1-84129 (Novus Biologicals, Littleton, CO, USA); phosphotyrosine clone 4G10 05-321 (Millipore); talin T3287, fibronectin F3648, α-tubulin clone DM1A T9026, α-actinin A5044, tensin1 SAB200283 (Sigma-Aldrich, St. Louis, MO, USA); phosphotyrosine clone P-Tyr-100 9411 (Cell Signaling, Danvers, MA, USA); β1 integrin clone 12G10 ab30394 (Abcam, Cambridge, MA, USA); LAMP1 bs-1970R (Bioss, Woburn, MA, USA); Epcam G8.8 was deposited to the DSHB by Farr, A.G.
F-actin was visualized using Rhodamine phalloidin (Thermo-Fisher, Carlsbad, CA, USA) or Actistain 670 (Cytoskeleton, Denver, CO, USA). Fluorescently conjugated secondary antibodies used were: Dylight 488, 550 and 633 conjugated anti-mouse and anti-rabbit were purchased from Thermo-Fisher. FITC anti-rat, Alexa-fluor 488 anti-mouse, HRP-conjugated anti-mouse and anti-rabbit secondary antibodies were purchased from Jackson ImmunoResearch. The polydimethylsiloxane (PDMS) substrates were prepared as previously described(52 (link)).
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3

Immunofluorescence Imaging of Focal Adhesions

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HUVECs were fixed with 2% PFA after treatment for 24 h with DMSO or KCH-1521, and blocked with 5% normal goat serum (NGS; #16210, Gibco) in 1× PBS + 0.1% Tween 20 (PBST) for 1 h. The cells were incubated for 1 h at room temperature (RT) with the following primary antibodies: talin (T3287), vinculin (V9131, both from Sigma-Aldrich), and paxillin (610051, BD Biosciences, San Jose, CA, USA). After washing, the cells were incubated for 1 h at RT with Alexa Fluor 594-conjugated anti-mouse IgG (A11005) and Alexa Fluor 488-conjugated Phalloidin (A12379, both from Molecular Probes, Eugene, OR, USA). Nuclei were stained with 4′,6-diamidino-2-phenylindole (DAPI; D9542, Sigma-Aldrich). Negative controls for immunofluorescence staining were used to evaluate the specificity of primary antibodies and to exclude the possibility of non-specific staining of secondary antibodies by omitting the incubation of primary antibodies [37 (link)]. All immunofluorescent images were obtained using the TE-FM Epi-fluorescence system attached to an inverted microscope (BX61, Olympus, Tokyo, Japan).
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4

Integrin-Mediated Cell Adhesion and Signaling

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Rabbit anti-human α5 integrin (ab25251) and β1 integrin (ab52971) monoclonal antibodies were purchased from Abcam (Cambridge, UK). Talin (T3287) was purchased from Sigma-Aldrich (Shanghai, China). HMGN2 (9437P), phospho-FAK (3284), FAK (3285); phospho-Src (6943) and Src (2109) were purchased from Cell Signaling Technology (Danvers, MA, USA). Rhodamine-conjugated phalloidin, DAPI and FITC were purchased from Sigma-Aldrich. RBITC-conjugated secondary antibody was purchased from Beyotime (Shanghai, China). Cytochalasin B and fibronectin peptide were acquired from Sigma-Aldrich. TRIzol reagent was obtained from Invitrogen (Carlsbad, CA, USA). RevertAid First Strand cDNA Synthesis kit and Maxima® SYBR-Green were obtained from Thermo Fisher Scientific (Vilnius, Lithuania). The PCR primers were obtained from Sangon Biotech Co., Ltd. (Shanghai, China). RPMI-1640 medium was purchased from HyClone, Thermo Scientific (Beijing, China). Fetal bovine serum (FBS) was obtained from FuMeng Gene Co., Ltd. (Shanghai, China). Penicillin-streptomycin was purchased from Beijing Solarbio Science and Technology Co., Ltd. (Beijing, China). Other chemical reagents were all analytical grade.
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5

Western Blot Analysis of Protein Signaling

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Antibodies to hnRNPA1 (ab5832, ab50492), hnRNPA3 (ab50949), hnRNPA2/B1 (ab64800), hnRNPL (ab6106, ab65049) and GAPDH (ab8245) or β-actin (ab8227) as loading controls, were from Abcam. Antibodies against acetyl-Lys (9441), pAKT (40665) and AKT (9272) were from Cell Signaling Technology. Other antibodies used were: ERK (sc-93) and pERK (sc-7383) from Santa Cruz Biotechnology; KRAS (05–516) from Millipore and Talin (T3287) from Sigma-Aldrich.
Epidermal growth factor (EGF 20ng/ml), trichostatin (TSA, 0.5μM) and sodium butyrate were from Sigma-Aldrich, UO126 (10μM) from Promega, LY294002 (10μM) from Calbiochem and Fibronectin from BD Biosciences.
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6

Western Blot Analysis of Cytoskeletal Proteins

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Whole cell lysates were used for Western blotting following routine protocols for gel electrophoresis and trans-blotting, as described earlier [31, 33] . Equal amounts of 10 µL lysate containing 2 µg/µL protein were loaded on precast TGX stain-free gels (Bio-Rad, Munich, Germany). Transturbo blot PVDF membranes (Bio-Rad) were used for blotting. Each Western blot contained 5 samples for each group: 4 h 1g, 4 h RPM-AD cells, 24 h 1g, 24 h RPM AD cells and 24 h RPM MCS.
The following primary antibodies were used at a dilution of 1:1000: fibronectin (F3648), laminin (L9393) and talin (T3287) (all Sigma-Aldrich) and vascular endothelial growth factor (VEGFA; ab46154, Abcam, Cambridge, United Kingdom). The corresponding secondary antibodies were used at a dilution of 1:3000: HRP-linked anti-mouse IgG (#7076) and anti-rabbit IgG (#7074, both Cell Signaling Technology, Massachusetts, USA). The analysis was performed in ChemiDoc XRS+ (Bio-Rad), and the densitometric quantification was performed using ImageLab (BioRad).
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