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4 protocols using ship 1

1

Exosomal Protein Profiling and Analysis

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Total proteins were extracted from plasma exosomes using radioimmunoprecipitation (RIPA) lysis buffer (BioSharp, Hefei, China), and the concentration was determined using the Pierce bicinchoninic acid (BCA) protein assay kit (Thermo Fisher Scientific, Rockford, IL, USA). Equal amounts of each protein sample were separated by 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to a polyvinylidene fluoride (PVDF) membrane before incubation overnight with primary antibodies against CD63 and CD9 (1:1,500; Abcam, Cambridge, MA, USA), SHIP1, CDKN1B, and SOCS1 (1:800; Santa Cruz Biotechnology, Dallas, TX, USA), and β-actin and phosphorylated NF-κB p65 (1:1,000; Cell Signaling Technology, Beverly, MA, USA). Membranes were then incubated with horseradish peroxidase (HRP)-conjugated secondary antibodies (1:4,000; Cell Signaling Technology). The protein bands were visualized using IMAGISOLANE LAS4000 Mini (GE Healthcare, Piscataway, NJ, USA). Image-Pro Plus 6.0 software (Media-controlnetics, Silver-Spring, MD, USA) was used to measure the scale values of protein bands, and the relative expression of the indicated proteins was normalized to the internal control β-actin.
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2

Western Blot Analysis of Signaling Proteins

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Cells were lysed with lysis buffer (0.5% Nonidet P-40, 50 mM Tris-HCl (pH 8.0), 120 mM NaCl, 50 mM NaF, plus 1 mM Na3VO4, 10 g/ml aprotinin, 100 g/ml leupeptin and 10 mM phenylmethylsulfonyl fluoride). Lysates (40 μg) were fractionated by SDS/PAGE and transferred to a polyvinylidene fluoride membrane (Immobilon-P, Millipore, Billerica, MA, USA). The following antibodies were used: SHIP-1, Fli-1 (Santa Cruz Biotechnology, Santa Cruz, CA, USA); β-actin (Sigma-Aldrich); goat-anti-mouse, and goat anti-rabbit HRP-conjugated (Promega, Madison, WI, USA), ERK, phospho-AKT, AKT, MYC and JAK2 antibodies from Cell Signaling Technology (CST, Danvers, MA, USA).
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Western Blot Analysis of Protein Phosphatases

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Total expression levels of protein/inositol phosphatases including Lyn, Dok1, Ship1, and Shc1 (Santa Cruz biotechnology) were measured upon pulsed stimulation. Lysis buffer supplemented with phosphatase inhibitor and protease inhibitor (1:100) was used to lyse cells. Protein concentrations were measured using Bradford assay (Bio-Rad) and samples were analyzed by Western blot as previously described38 (link) with primary antibodies from Santa Cruz biotechnology. For detection of Shc1 knockdown by western blot, rabbit anti-Shc1 primary antibody from BD Biosciences and Pierce HRP-conjugated polyclonal goat anti-rabbit secondary antibody were used. All blots were re-probed with rabbit anti-actin polyclonal antibody (Novus) and visualized with an Alpha Innotech (San Leandro, CA) imager using a Super- Signal West Femto sensitivity substrate (Thermo Scientific). The relative intensity (RI) was calculated as the quotient of the densitometry signal for the target protein band divided by that for actin, then normalized by the ratio obtained for the control sample.
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4

Macrophage Polarization and Signaling

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WT and Btk−/− BMDMs were treated ex vivo with an M1 or M2 polarizing cocktail as indicated. Expression of STAT1(Santa Cruz Biotechnology #sc-592), STAT6 (Santa Cruz Biotechnology #sc-621), pY-STAT1 (Cell Signaling #9171), pY-STAT6 (Imgenex #IMG408A), Akt (Cell Signaling #9271), pS-Akt (Cell Signaling #9272), NF-κB p65 (Santa Cruz Biotechnology #sc-372), pS-NF-κB p65 (Cell Signaling #3036S), iNOS (Transduction Laboratories #N39120) and SHIP-1 (Santa Cruz Biotechnology #sc8425), was determined by Western blot as described previously [23] (link).
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