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Bca protein assay reagent

Manufactured by Bio-Rad
Sourced in United States

The BCA protein assay reagent is a colorimetric detection kit used for the quantitative determination of protein concentration in a sample. It is based on the reduction of copper ions by proteins in an alkaline medium, and the subsequent chelation of the reduced copper ions with bicinchoninic acid (BCA) to produce a purple-colored complex that absorbs light at 562 nm.

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22 protocols using bca protein assay reagent

1

Canthin-6-one Protein Profiling Protocol

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The spore suspension was cultured in PDB medium at 25°C. After 24 h, a certain amount of canthin-6-one was added to the suspension, and the final concentration of canthin-6-one was 4.2 μg mL-1 (EC50). An equal amount of DMSO was added as a blank control. The mixed solution was then incubated at 25°C for 24 h. The mycelia were collected and washed three times with 1× PBS for protein extraction. Three biological replicates were used for each sample. Protein extraction and digestion were performed according to a previously described method [22 (link)]. Proteins were extracted using SDT buffer (4% sodium dodecyl sulfate, 0.1 M dithiothreitol, 100 mM Tris/HCl, pH 7.6), and then quantified using the BCA protein assay reagent (Bio-Rad Laboratories, Inc., Hercules, CA, USA). The filter-aided proteome preparation (FASP) method [23 (link)] was used to trypsinize (Promega, Madison, WI, USA), the appropriate amount of protein from each sample, and then the C18 cartridge (Empore™ SPE, bed I.D. 7 mm, volume 3 mL; Sigma, Kawasaki, Japan) was used to desalinize the hydrolyzed peptide. Dissolution buffer (40 μL, 0.1% trifluoroacetic acid) was added to the lyophilized peptides for reconstitution, and the peptide content was estimated using UV spectroscopy at 280 nm.
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2

Protein Extraction and Western Blot Analysis

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Whole-cell extracts were isolated using a RIPA lysis buffer supplemented with protease (Roche) and phosphatase inhibitors (Roche). The nuclei were broken with a 20 G needle. The concentration of the isolated proteins was determined using the BCA Protein Assay Reagent (BioRad). Fifteen to twenty micrograms of protein were separated on the BioRad gradient gels at 4% to 20% and transferred to nitrocellulose membranes (BioRad). The membranes were then incubated with the appropriate primary and secondary antibodies according to the manufacturer’s recommendations. The list of used antibodies are shown in Supplementary Data 2.
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3

Angptl2-Deficient Valve Interstitial Cells

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Valve interstitial cells (VICs) were isolated from AoV leaflets explants from 2-month old WT and Angptl2-KD mice, grown to confluence, sub-cultured and lysed in Laemmli sample buffer (Bio-Rad) for 10 min at 95 °C. HEK293 cells transfected with murine ANGPTL2 were lysed and the lysate clarified by centrifugation (15,000 rpm for 15 min at 4 °C). Protein concentration in the supernatant was determined using the BCA Protein Assay Reagent (Bio-rad). Then, 5–10 μg of proteins were loaded and separated on 10% acrylamide SDS-PAGE gels, transferred onto nitrocellulose membranes, and probed with antibodies against murine Angptl2 (1:1000, AF1444, R&D); VE-cadherin (1:500, Santacruz, CSC-28644), Vimentin (1:500, VP-V683, Vector Laboratories), α-SMA (1:500, A5228, Sigma-Aldrich). Membranes were then probed with secondary antibodies at a dilution factor of 1:5000. Chemiluminescence was used to detect protein expression (Western Lightning Plus ECL, Perkin Elmer).
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4

Measuring Caspase-8 and Caspase-9 Activity

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Caspase-8 and caspase-9 activity in cell lysates were measured using the fluorogenic Ac-VETDAMC peptide substrate (Sigma) or the caspase-9 colorimetric kit (Invitrogen) according to manufacturer’s instructions. For these experiments, cells were cultured on 6-well tissue culture plates. Cells were washed with serum-free medium and incubated for 16 hours in serum-free medium containing the peptides at final concentrations as indicated. Following incubation, cells were washed with PBS and lysed in 200 μl of lysis buffer ( 20 mM HEPES, 50 mM NaCl, pH7.2 10 mM DTT containing 1% CHAPS, 1 mM EDTA, 2 mM PMSF, leupeptin (10 μg/ml; Sigma) and pepstatin A (10 μg/ml; Sigma) for 30 min on ice. After centrifugation (7,000 xg, 10 min), the protein concentration of the supernatant was determined using the BCA Protein assay reagent (Bio-Rad). Subsequently, 20 μg of each sample was diluted to a final volume of 200 μl in assay buffer (20 mM HEPES, 50 mM NaCl, pH7.2 10 mM DTT, 0.1% CHAPS containing either the caspase-8 or caspase-9 substrate) in a 96-well plate. For caspase-8, fluorescence was determined (excitation 405 nm, emission 538 nm) with a Cary Eclipse fluorescence spectrophotometer (Varian, Palo Alto, Ca). For caspase-9 activity, absorbance at 450 nm was measured.
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5

Quantifying Cytokine Levels in Tissues

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Levels of IL-6 and TNF-α in the serum and tissue were measured using an enzyme-linked immunosorbent assay (ELISA), as previously described [42 (link)]. Briefly, 96-well plates (SPL Life Science, Seoul, Korea) were coated with 100 μL of anti-mouse monoclonal antibody (1.0 mg/mL at pH 7.4 in phosphate buffered saline [PBS]) and incubated overnight at 4 °C. After additional washes, 50 μL of sample, or IL-6 and TNF-α standard was added and incubated at room temperature for 2 h. Plates were washed and 0.2 μg/mL of biotinylated anti-mouse antibody was added and incubated at room temperature for 2 h. After washing, avidin-peroxidase was added and plates were incubated for 30 min at 37 °C. The plates were then washed again and (2,2′-azinobis [3-ethylbenzothiazoline-6-sulfonic acid]-diammonium salt) substrate was added. Color development was measured at 405 nm using an automated microplate ELISA reader (Molecular Devices, Sunnyvale, CA, USA). Standard curves were prepared using serial dilutions of recombinant antibody. Protein concentrations were measured using bicinchoninic acid (BCA) protein assay reagent (Bio-Rad, Hercules, CA, USA).
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6

Adherent Cell Viability Assay

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The measurement of cell viability was based on the total cellular mass of adherent cells using the detergent-compatible BCA protein assay reagent (Bio-Rad, Hercules, CA, USA) with bovine serum albumin as a standard [44 (link)]. None of the tested compounds decreased total protein levels below the nontreated BMCs/BMMs (data not shown). The proliferation of adherent BMMs was detected by ATP Cell Viability Test (BioThema, Sweden) and results are displayed as percentage of nontreated BMCs/BMMs.
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7

Western Blot Protocol for Protein Analysis

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Cells were harvested and lysed with lysis buffer (Cell Signaling Technology, Danvers, MA, USA). Total protein was quantified using the BCA protein assay reagent (Bio-Rad Laboratories, Hercules, CA, USA). Proteins were resolved by 10% SDS-PAGE and transferred to a PVDF membrane. After blocking with Tris-buffered saline containing 0.1% Tween-20 (Bio-Rad Laboratories) and 5% skim milk (Gibco/Thermo Fisher Scientific), the membrane was incubated with primary antibodies against COUP-TFII (1:500, Abcam, Cambridge, MA, USA), MEK2 (1:2000, Cell Signaling Technology), Cyclin D1 (1:2000, Cell Signaling Technology), c-Jun (1:2000, Cell Signaling Technology), c-Fos (1:1000, Cell Signaling Technology), and β-actin (1:1000, Santa Cruz Biotechnology, Dallas, TX, USA). After incubation with secondary horseradish peroxidase–conjugated anti-mouse or anti-rabbit antibodies (Thermo Fisher Scientific), signals were visualized using an enhanced chemiluminescence reagent (ECL) (Millipore, Billerica, MA, USA) in a LAS-4000 lumino-image analyzer system (Fujifilm, Tokyo, Japan).
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8

Immunoblot Analysis of Cell Signaling

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Cells were harvested and lysed with lysis buffer (Beyotime Institute of Biotechnology), and total protein concentration was assessed with BCA protein assay reagent (Bio‐Rad, CA, USA). Thirty micrograms of each sample was loaded and subjected to SDS‐polyacrylamide gels and then transferred to immunoblot PVD membranes (Millipore, Billerica, MA, USA). The membrane was blocked in blocking buffer (5% milk and 2 mg/ml BSA in PBST) for 1 hr and then incubated in primary antibodies against p53 (1:500; Cell Signaling), p21 (1:1,000; Cell Signaling), p16 (1:10,000; Cell Signaling), Atg7 (1:1,000; Cell Signaling), Beclin1 (1:1,000; Abcam), P62 (1:1,000; Abcam), LC3 (1:1,000; Abcam) and β‐actin (1:2,000; Abcam) in blocking solution overnight. After being washed in PBST for 10 min, membranes were incubated with secondary antibody in blocking solution for 2 hr at room temperature. After incubation, membranes were washed in PBST. An enhanced chemiluminescence kit (Amersham Biosciences, Piscataway, NJ, USA) was applied for visualization. ImageJ was used to quantify the results.
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9

Western Blot Analysis of Autophagy Markers

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Lysis buffer (Beyotime Institute of Biotechnology, Shanghai, China) was employed to lyse
harvested cells, and the concentration of total protein isolated from cells was assessed
with BCA protein assay reagent (Bio-Rad, Hercules, CA, USA). In SDS-polyacrylamide gels,
30 micrograms of each sample was loaded and then after separation, proteins were
transferred to immunoblot PVD membranes (Millipore, Billerica, MA, USA). The membranes
were blocked with blocking buffer containing 5% non-fat milk and 2 mg/ml BSA in PBST for 1
h and then were incubated overnight with the primary antibodies against Beclin1 (1:1,000;
Abcam), LC3 (1:1,000; Abcam) and β-actin (1:2,000; Abcam). The membranes were incubated
with secondary antibody (Boster, Pleasanton, NJ, USA) in blocking solution for 2 h at RT
after washing in PBST for 10 min. The membranes were washed again with PBST and then be
visualized by an enhanced chemiluminescence kit (Amersham Biosciences, Piscataway, NJ,
USA) and the results were quantified by ImageJ.
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10

Optimized Cell Lysis and Protein Extraction

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All samples in the lysis buffer was homogenized (4 % SDS, 1 mM DTT, 150 mM Tris-HCl pH 8.0). The homogenate was incubated in boiling water for 3 min and then placed in an ice bath. The crude extract was clarified at 16000 g and 25 °C for 10 min and BCA protein assay reagent was used to assess protein content (Bio-Rad, Hercules, CA, USA). The supernatants were then stored at −80 °C until needed.
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